Factsheet for GSMUA_Achr6P18840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P01170_001	Banana	nucleus	72.4	76.08
GSMUA_Achr10P...	Banana	nucleus	48.18	50.0
Solyc06g065440.1.1	Tomato	cytosol	41.16	48.43
CDY12041	Canola	nucleus	45.04	45.48
CDY03148	Canola	nucleus	47.46	45.48
Bra040971.1-P	Field mustard	nucleus	46.49	45.07
Os01t0871200-03	Rice	nucleus	56.42	44.64
KXG33778	Sorghum	nucleus	55.69	44.32
Zm00001d012260_P001	Maize	nucleus	55.45	44.12
PGSC0003DMT400067092	Potato	nucleus	46.0	43.88
VIT_18s0072g00840.t01	Wine grape	nucleus	55.93	43.83
CDY46467	Canola	nucleus	51.33	43.44
Bra036750.1-P	Field mustard	nucleus	51.09	42.97
CDX91774	Canola	nucleus	51.57	42.94
TraesCS3A01G381900.1	Wheat	nucleus	53.75	42.86
Zm00001d042686_P001	Maize	nucleus	53.51	42.66
TraesCS3B01G414500.1	Wheat	nucleus	53.51	42.5
TraesCS3D01G375000.1	Wheat	nucleus	53.27	42.31
Solyc11g017140.1.1	Tomato	nucleus	49.64	42.27
AT1G34370.1	Thale cress	nucleus	50.85	42.08
KRH34957	Soybean	nucleus, plastid	49.39	40.24
KRG91822	Soybean	nucleus, plastid	49.15	39.88
PGSC0003DMT400023881	Potato	nucleus	48.91	39.38
KRH08551	Soybean	nucleus, plastid	49.64	39.35
GSMUA_Achr1P15330_001	Banana	cytosol	24.7	36.3
GSMUA_Achr11P...	Banana	nucleus	25.42	30.88
GSMUA_Achr10P...	Banana	nucleus	25.67	30.2
GSMUA_Achr11P...	Banana	nucleus	15.5	28.57
GSMUA_Achr6P21380_001	Banana	nucleus	15.25	26.58
GSMUA_Achr5P26210_001	Banana	nucleus	15.98	23.66
GSMUA_Achr6P01410_001	Banana	nucleus	15.98	23.49
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	16.95	23.33
GSMUA_Achr9P12600_001	Banana	nucleus	16.95	22.51
GSMUA_AchrUn_...	Banana	nucleus	17.43	22.02
GSMUA_Achr3P03850_001	Banana	plastid	16.95	21.67
GSMUA_Achr6P03470_001	Banana	nucleus	16.46	21.32
GSMUA_Achr3P11870_001	Banana	nucleus	17.43	21.18
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	17.43	21.11
GSMUA_AchrUn_...	Banana	nucleus	17.43	20.93
GSMUA_Achr4P01560_001	Banana	nucleus	16.22	20.81
GSMUA_AchrUn_...	Banana	plastid	16.22	20.49
GSMUA_Achr1P16530_001	Banana	nucleus	17.19	19.67
GSMUA_Achr9P22340_001	Banana	nucleus	16.71	18.9
GSMUA_Achr4P06350_001	Banana	nucleus	13.32	17.74
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	16.22	15.55

Protein Annotations

EnsemblPlants:GSMUA_Achr6P18840_001	EnsemblPlants:GSMUA_Achr6T18840_001	EnsemblPlantsGene:GSMUA_Achr6G18840_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF41
PFscan:PS50157	ScanProsite:PS00028	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000296393A	UniProt:M0T882
MapMan:15.5.15	:	:	:	:	:

Description

Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18840_001]

Coordinates

chr6:-:13038182..13039877

Molecular Weight (calculated)

45547.8 Da

IEP (calculated)

6.453

GRAVY (calculated)

-0.499

Length

413 amino acids

Sequence
(BLAST)

001: MLSNLSFLEQ KIHQVQDIVR SIISHEDQFL DQANELAAQQ QLVTADLTYI IIQLISTAGT LLPDIKNALL STNPAVGRPG SNQKQHEILP VEVAKASQYD
101: SLIKDLNSCG GKEDELIKCS NNSGVEASEP IPIEDHDTKD NDDGMDGENL PPGSYEVLQL EEEEILAPHT HFCLICGKGF KRDANLRMHM RGHGDEYKSP
201: AALAKPSKEA SIEPQPLRRY SCPFVGCKRN KEHKKFQPLK TILCVKNHYK RSHCDKSYTC SRCRTKKFSI IADLKTHEKH CGRDKWICSC GTTFSRKDKL
301: FGHVALFQGH APAIPMDDAK VLVTSDKAQV SEASSGMPGN MGYNFSGNTS LDAQSPDIKG VDDGHGCFSP MTLDACNIWG LAEFPHSAYE VSESTFSFLA
401: TGSCSSIQRN GEN

Best Arabidopsis Sequence Match ( AT1G34370.2 )
(BLAST)

001: METEDDLCNT NWGSSSSKSR EPGSSDCGNS TFAGFTSQQK WEDASILDYE MGVEPGLQES IQANVDFLQG VRAQAWDPRT MLSNLSFMEQ KIHQLQDLVH
101: LLVGRGGQLQ GRQDELAAQQ QQLITTDLTS IIIQLISTAG SLLPSVKHNM STAPGPFTGQ PGSAVFPYVR EANNVASQSQ NNNNCGAREF DLPKPVLVDE
201: REGHVVEEHE MKDEDDVEEG ENLPPGSYEI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY KTAAALAKPN KESVPGSEPM LIKRYSCPFL
301: GCKRNKEHKK FQPLKTILCV KNHYKRTHCD KSFTCSRCHT KKFSVIADLK THEKHCGKNK WLCSCGTTFS RKDKLFGHIA LFQGHTPAIP LEETKPSAST
401: STQRGSSEGG NNNQGMVGFN LGSASNANQE TTQPGMTDGR ICFEESFSPM NFDTCNFGGF HEFPRLMFDD SESSFQMLIA NACGFSPRNV GESVSDTSL

Arabidopsis Description

STOP1Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.