Factsheet for GSMUA_Achr9P22340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017556	Potato	nucleus	30.68	78.32
GSMUA_Achr9P12600_001	Banana	nucleus	57.81	67.85
GSMUA_Achr3P03850_001	Banana	plastid	58.9	66.56
GSMUA_AchrUn_...	Banana	plastid	57.81	64.53
GSMUA_Achr6P03470_001	Banana	nucleus	56.16	64.26
GSMUA_AchrUn_...	Banana	nucleus	56.71	63.3
GSMUA_Achr4P06350_001	Banana	nucleus	53.42	62.9
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	58.36	62.46
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	51.23	62.33
GSMUA_Achr4P01560_001	Banana	nucleus	54.79	62.11
GSMUA_Achr3P11870_001	Banana	nucleus	57.26	61.47
GSMUA_AchrUn_...	Banana	nucleus	56.99	60.47
Solyc01g087050.2.1	Tomato	nucleus	46.85	57.38
GSMUA_Achr11P...	Banana	nucleus	34.79	56.7
VIT_13s0064g01060.t01	Wine grape	nucleus	52.33	55.69
GSMUA_Achr1P16530_001	Banana	nucleus	52.88	53.46
KRH43510	Soybean	nucleus, plastid	49.32	52.02
GSMUA_Achr6P21380_001	Banana	nucleus	33.42	51.48
KRH27491	Soybean	nucleus, plastid	49.04	50.85
KRH13927	Soybean	nucleus, plastid	47.12	50.29
KRH20837	Soybean	nucleus, plastid	48.49	49.58
GSMUA_Achr5P26210_001	Banana	nucleus	37.53	49.1
GSMUA_Achr6P01410_001	Banana	nucleus	35.07	45.55
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	35.89	30.39
GSMUA_Achr1P15330_001	Banana	cytosol	18.63	24.2
GSMUA_Achr11P...	Banana	nucleus	19.73	21.18
GSMUA_Achr10P...	Banana	nucleus	18.36	19.09
GSMUA_Achr10P...	Banana	nucleus	20.55	18.84
GSMUA_Achr5P01170_001	Banana	nucleus	19.18	17.81
GSMUA_Achr6P18840_001	Banana	nucleus	18.9	16.71

Protein Annotations

EnsemblPlants:GSMUA_Achr9P22340_001	EnsemblPlants:GSMUA_Achr9T22340_001	EnsemblPlantsGene:GSMUA_Achr9G22340_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR003616	InterPro:IPR013087	InterPro:Post-SET_dom	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	KEGG:00310+2.1.1.43
PANTHER:PTHR10593	PANTHER:PTHR10593:SF98	PFscan:PS50157	PFscan:PS50868	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000296BBFE	UniProt:M0U2J3	MapMan:15.5.15	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G22340_001]

Coordinates

chr9:-:27420520..27426923

Molecular Weight (calculated)

40378.7 Da

IEP (calculated)

7.618

GRAVY (calculated)

-0.590

Length

365 amino acids

Sequence
(BLAST)

001: MADPNPSFFK GYCNRSRFSS NYPPPLPLSL FPTYNLVDCN FLHLRSPPPS PPLREALPLL GLSPTRHHRQ EESSSSCSAF PEGEGGGSCT GGDNEKKSLK
101: DGEDEQGAVA VSLHIGLPSS GAADLISGVS STMLNDGEGP EEDGGGGDAI PSGYPIIGRL IKGQYWIPTP SQILTVLSQF SCPVCCKTFN RYNNMQMHMW
201: GHGQQYRKGP ESLRGAQPTA MRRLPCYCCA PGCRNNIDHP RSKPLKDFRT LQTHYKRRHG IKPFACCKCG KAFAVRGDWR THEKNCGQLW YCTCGSDFKH
301: KRSLKDHIKA FGHGHAAYGI DCAEEEDEPS SEIEQDHDHH HHDYSFSLTL CGTLIKSLLF VGLYF

Best Arabidopsis Sequence Match ( AT1G13290.1 )
(BLAST)

001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY

Arabidopsis Description

WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.