Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P03850_001 | Banana | plastid | 77.49 | 74.61 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 71.06 | 68.63 |
| Solyc11g062060.1.1 | Tomato | nucleus | 55.63 | 66.28 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 67.85 | 66.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 72.99 | 65.99 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 71.38 | 65.1 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 62.38 | 64.67 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 68.81 | 64.07 |
| GSMUA_AchrUn_... | Banana | plastid | 65.92 | 62.69 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 68.49 | 62.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.95 | 61.77 |
| PGSC0003DMT400035408 | Potato | nucleus | 65.92 | 59.08 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 67.85 | 57.81 |
| GSMUA_Achr11P... | Banana | nucleus | 41.16 | 57.14 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 56.91 | 57.1 |
| KRH10191 | Soybean | nucleus, plastid | 62.06 | 55.94 |
| AT1G51220.1 | Thale cress | nucleus | 60.13 | 55.49 |
| Bra030450.1-P | Field mustard | nucleus | 59.81 | 54.71 |
| CDY35565 | Canola | nucleus | 59.49 | 54.57 |
| KRH23146 | Soybean | nucleus, plastid | 61.41 | 54.57 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 63.34 | 54.57 |
| Bra018902.1-P | Field mustard | plastid | 58.84 | 54.3 |
| CDY06390 | Canola | nucleus | 58.2 | 54.19 |
| CDY22834 | Canola | nucleus, plastid | 58.84 | 54.14 |
| CDY29624 | Canola | nucleus | 59.16 | 54.12 |
| KRH29701 | Soybean | nucleus | 59.16 | 53.96 |
| CDY25224 | Canola | nucleus | 58.52 | 53.85 |
| KRH24697 | Soybean | nucleus, plastid | 58.84 | 53.67 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 38.91 | 51.05 |
| Bra031239.1-P | Field mustard | nucleus | 58.84 | 50.97 |
| Bra023918.1-P | Field mustard | nucleus | 58.52 | 50.7 |
| CDY57920 | Canola | nucleus | 58.52 | 50.7 |
| CDY27556 | Canola | nucleus | 57.23 | 49.72 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 43.73 | 48.75 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 41.8 | 46.26 |
| AT3G20880.1 | Thale cress | nucleus | 56.91 | 42.96 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 43.09 | 31.09 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 20.58 | 22.78 |
| GSMUA_Achr11P... | Banana | nucleus | 22.83 | 20.88 |
| GSMUA_Achr10P... | Banana | nucleus | 23.47 | 18.34 |
| GSMUA_Achr10P... | Banana | nucleus | 19.94 | 17.66 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 22.19 | 17.56 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 22.51 | 16.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P12600_001 | EnsemblPlants:GSMUA_Achr9T12600_001 | EnsemblPlantsGene:GSMUA_Achr9G12600_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00029561F2 | UniProt:M0TZR9 | MapMan:15.5.15 | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G12600_001]
Coordinates
chr9:-:8192383..8194246
Molecular Weight (calculated)
35170.5 Da
IEP (calculated)
8.324
GRAVY (calculated)
-0.763
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYTNFFI GIHQHYAFTS KPPPPSIAPQ FYNLSTQSYT NAFIPGHPPS PPLREALPLL SLSPTRHQEE DEDTSCSAST EVAKNKASGV DDEADDAVTV
101: ALHIGPPSPG AVDLISRLPS TSEDRKLNKG QYWIPTPSQI LIGPTQFSCP VCYKTFNRYN NMQMHMWGHG SQYRKGPKSL RGIQPTAMLR LPCYCCAPGC
201: RNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVKGDWRTHE KNCGKLWYCV CGSDFKHKRS LKDHIKAFGG EHAAYDINCF EEEDDPSSEI
301: EQDCHQRNEQ R
101: ALHIGPPSPG AVDLISRLPS TSEDRKLNKG QYWIPTPSQI LIGPTQFSCP VCYKTFNRYN NMQMHMWGHG SQYRKGPKSL RGIQPTAMLR LPCYCCAPGC
201: RNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVKGDWRTHE KNCGKLWYCV CGSDFKHKRS LKDHIKAFGG EHAAYDINCF EEEDDPSSEI
301: EQDCHQRNEQ R
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.