Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P12600_001 | Banana | nucleus | 65.99 | 72.99 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 63.08 | 72.33 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 67.73 | 72.14 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 65.41 | 70.53 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 69.19 | 69.79 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 64.53 | 68.94 |
| Solyc11g062060.1.1 | Tomato | nucleus | 50.0 | 65.9 |
| GSMUA_AchrUn_... | Banana | plastid | 62.21 | 65.44 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 61.05 | 62.87 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.01 | 62.08 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 59.59 | 60.29 |
| GSMUA_Achr11P... | Banana | nucleus | 37.5 | 57.59 |
| PGSC0003DMT400035408 | Potato | nucleus | 57.56 | 57.06 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 60.47 | 56.99 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 50.29 | 55.81 |
| KRH10191 | Soybean | nucleus, plastid | 55.81 | 55.65 |
| KRH23146 | Soybean | nucleus, plastid | 55.23 | 54.29 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 56.69 | 54.02 |
| Bra030450.1-P | Field mustard | nucleus | 53.2 | 53.82 |
| AT1G51220.1 | Thale cress | nucleus | 52.62 | 53.71 |
| CDY29624 | Canola | nucleus | 52.62 | 53.24 |
| CDY35565 | Canola | nucleus | 52.33 | 53.1 |
| CDY22834 | Canola | nucleus, plastid | 52.03 | 52.96 |
| KRH24697 | Soybean | nucleus, plastid | 52.33 | 52.79 |
| CDY25224 | Canola | nucleus | 51.74 | 52.66 |
| Bra018902.1-P | Field mustard | plastid | 51.45 | 52.52 |
| KRH29701 | Soybean | nucleus | 52.03 | 52.49 |
| CDY06390 | Canola | nucleus | 50.87 | 52.4 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 35.76 | 51.9 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 41.28 | 50.9 |
| Bra031239.1-P | Field mustard | nucleus | 50.87 | 48.75 |
| Bra023918.1-P | Field mustard | nucleus | 50.58 | 48.47 |
| CDY57920 | Canola | nucleus | 50.58 | 48.47 |
| CDY27556 | Canola | nucleus | 49.71 | 47.77 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 38.08 | 46.62 |
| AT3G20880.1 | Thale cress | nucleus | 50.58 | 42.23 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 39.53 | 31.55 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 18.02 | 22.06 |
| GSMUA_Achr11P... | Banana | nucleus | 18.6 | 18.82 |
| GSMUA_Achr10P... | Banana | nucleus | 21.51 | 18.59 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 20.93 | 18.32 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 20.93 | 17.43 |
| GSMUA_Achr10P... | Banana | nucleus | 17.44 | 17.09 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP18320_001 | EnsemblPlants:GSMUA_AchrUn_randomT18320_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG18320_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000296C544 |
| UniProt:M0UA91 | MapMan:15.5.15 | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18320_001]
Coordinates
chrchrUn_random:-:87060953..87063165
Molecular Weight (calculated)
38662.6 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.628
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MADPYSNFYK LYSHYPLISD PSFPPAAFQS YSFSTHSSLP PHPPSPPLRE ALPLLSLRPT RHQEEEEDTS CSASAGGSRN KAARDDDEAD DEVGGVTVAL
101: HIGLPSPGDD VVTSGYPSNS LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHKWGHGSQY RKGPESLRGI QPTAMLRLPC YCCAPGCRNN
201: IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGHGHA AYGINCFEEE DDPSSEIEQD
301: CHQLNECHRG PSPVATFRAH MNCLISFPCS DELVCPSAVL YFLF
101: HIGLPSPGDD VVTSGYPSNS LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHKWGHGSQY RKGPESLRGI QPTAMLRLPC YCCAPGCRNN
201: IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVK GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGHGHA AYGINCFEEE DDPSSEIEQD
301: CHQLNECHRG PSPVATFRAH MNCLISFPCS DELVCPSAVL YFLF
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.