Factsheet for GSMUA_Achr1P15330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22890.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G22890.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G22890.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT5G22890.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT5G22890.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	56.23	46.47
KRH22822	Soybean	plastid	45.2	45.68
CDY09179	Canola	nucleus	49.82	43.21
PGSC0003DMT400001105	Potato	nucleus	48.04	42.45
VIT_06s0061g00780.t01	Wine grape	nucleus	58.01	41.79
AT5G22890.1	Thale cress	nucleus	52.67	39.68
TraesCS1A01G060200.1	Wheat	nucleus	53.38	39.06
TraesCS1D01G061200.1	Wheat	nucleus	53.74	39.02
CDY09178	Canola	nucleus	50.89	38.75
Solyc11g066420.1.1	Tomato	nucleus, plastid	52.67	38.54
CDY26965	Canola	nucleus	50.18	38.52
Os08t0562300-01	Rice	nucleus	52.67	38.44
TraesCS1B01G078700.1	Wheat	nucleus	53.38	38.27
KRH26538	Soybean	nucleus, plastid	55.52	38.05
CDY69109	Canola	nucleus	50.18	37.9
KRH25115	Soybean	nucleus	53.38	37.88
Os04t0165200-01	Rice	nucleus	49.82	37.74
CDX74505	Canola	nucleus	49.82	37.23
Bra002438.1-P	Field mustard	nucleus	49.82	37.23
CDX98183	Canola	nucleus	49.82	37.23
CDY31715	Canola	nucleus	49.82	37.23
CDY26966	Canola	nucleus	49.82	37.23
KRH30553	Soybean	nucleus, plastid	53.02	36.34
Zm00001d031895_P001	Maize	nucleus	53.74	36.04
OQU80698	Sorghum	nucleus	54.09	35.76
GSMUA_Achr10P...	Banana	nucleus	39.15	31.34
Bra020223.1-P	Field mustard	nucleus	32.74	30.98
Bra020224.1-P	Field mustard	nucleus	32.38	30.23
GSMUA_Achr11P...	Banana	nucleus	21.71	27.23
GSMUA_Achr10P...	Banana	nucleus	37.72	26.63
GSMUA_Achr5P01170_001	Banana	nucleus	35.94	25.7
GSMUA_Achr6P18840_001	Banana	nucleus	36.3	24.7
GSMUA_Achr6P21380_001	Banana	nucleus	19.93	23.63
Bra002437.1-P	Field mustard	nucleus	19.93	22.49
GSMUA_Achr6P01410_001	Banana	nucleus	21.35	21.35
GSMUA_Achr9P12600_001	Banana	nucleus	22.78	20.58
GSMUA_Achr3P03850_001	Banana	plastid	23.49	20.43
GSMUA_Achr8P25650_001	Banana	nucleus, plastid	21.71	20.33
GSMUA_Achr5P26210_001	Banana	nucleus	19.93	20.07
GSMUA_AchrUn_...	Banana	nucleus	23.13	19.88
GSMUA_AchrUn_...	Banana	plastid	23.13	19.88
GSMUA_Achr6P03470_001	Banana	nucleus	22.06	19.44
GSMUA_Achr4P01560_001	Banana	nucleus	22.06	19.25
GSMUA_Achr3P11050_001	Banana	cytosol, nucleus, plastid	22.78	18.77
GSMUA_Achr9P22340_001	Banana	nucleus	24.2	18.63
GSMUA_Achr3P11870_001	Banana	nucleus	22.42	18.53
GSMUA_AchrUn_...	Banana	nucleus	22.06	18.02
GSMUA_Achr1P16530_001	Banana	nucleus	23.13	18.01
GSMUA_Achr4P06350_001	Banana	nucleus	19.57	17.74
GSMUA_Achr5P09960_001	Banana	endoplasmic reticulum, nucleus, plastid	21.71	14.15

Protein Annotations

EnsemblPlants:GSMUA_Achr1P15330_001	EnsemblPlants:GSMUA_Achr1T15330_001	EnsemblPlantsGene:GSMUA_Achr1G15330_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593
PANTHER:PTHR10593:SF41	PFAM:PF13912	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355
SUPFAM:SSF57667	UniParc:UPI0002967DD5	UniProt:M0S041	MapMan:15.5.15	:	:

Description

Putative Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G15330_001]

Coordinates

chr1:-:11539304..11540149

Molecular Weight (calculated)

31614.0 Da

IEP (calculated)

7.660

GRAVY (calculated)

-0.473

Length

281 amino acids

Sequence
(BLAST)

001: MDAQRRDLLY HLAVLNEKVQ QVQSLVGLVV SPELLRQEPL DAVVSGARSL VQEIIVAASS MMHALQQQQQ QEEEKEEEEE EENEAVGYEA TGAALDHDLH
101: RLLDGVLECS VGGEGGSRCE IVEVDAADLV AKYTHYCQVC GKGFKRDANL RMHMRAHGEE YKTITALAKG APPPVAGAAR RYSCPQEGCR WNRKHAKFQP
201: LKSMVCVKNH YRRSHCPKMY VCNRCNRRQF AVLSDLRTHE KHCGDLRWMC SCGTTFTRKD KLMGHVSLFL GHTPLPNCLA K

Best Arabidopsis Sequence Match ( AT5G22890.1 )
(BLAST)

001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK

Arabidopsis Description

STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.