Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57608 | Canola | nucleus | 43.21 | 65.0 |
| Bra003295.1-P | Field mustard | nucleus | 43.21 | 63.41 |
| CDX67704 | Canola | nucleus | 43.21 | 63.41 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 54.57 | 63.34 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 59.28 | 62.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.79 | 62.69 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 55.4 | 61.92 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 49.86 | 60.0 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 57.06 | 59.71 |
| GSMUA_AchrUn_... | Banana | plastid | 54.02 | 59.63 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 52.63 | 59.56 |
| GSMUA_Achr11P... | Banana | nucleus | 36.84 | 59.38 |
| PGSC0003DMT400077822 | Potato | nucleus | 50.42 | 57.23 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 54.02 | 57.18 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 50.97 | 57.14 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.02 | 56.69 |
| Bra007346.1-P | Field mustard | nucleus | 48.2 | 56.68 |
| KRG95308 | Soybean | nucleus, plastid | 53.46 | 55.3 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 47.37 | 55.16 |
| KRH66988 | Soybean | nucleus | 53.46 | 53.91 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 53.46 | 52.88 |
| CDX88959 | Canola | nucleus | 52.91 | 52.47 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 52.63 | 52.2 |
| KRH71956 | Soybean | nucleus, plastid | 53.46 | 52.02 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 33.8 | 51.48 |
| CDX72006 | Canola | nucleus | 53.19 | 51.47 |
| CDY06083 | Canola | nucleus | 52.91 | 51.07 |
| AT3G57670.1 | Thale cress | nucleus | 53.19 | 50.13 |
| KRH33045 | Soybean | nucleus, plastid | 53.19 | 49.74 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 36.57 | 47.31 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 36.01 | 46.26 |
| Solyc03g059270.2.1 | Tomato | nucleus | 41.27 | 43.57 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 37.67 | 31.55 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 18.01 | 23.13 |
| GSMUA_Achr11P... | Banana | nucleus | 19.11 | 20.29 |
| GSMUA_Achr10P... | Banana | nucleus | 20.5 | 18.59 |
| GSMUA_Achr10P... | Banana | nucleus | 18.01 | 18.52 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 19.94 | 18.32 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 19.67 | 17.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P16530_001 | EnsemblPlants:GSMUA_Achr1T16530_001 | EnsemblPlantsGene:GSMUA_Achr1G16530_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | UniParc:UPI000296605C | UniProt:M0S0G1 | MapMan:15.5.15 |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G16530_001]
Coordinates
chr1:-:12333562..12335236
Molecular Weight (calculated)
41034.7 Da
IEP (calculated)
9.937
GRAVY (calculated)
-0.814
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MHVIPSQVQA PSMADAFKGN SFAFTSYTTQ FQSSPLTPLR EALPLLSLSP KKHHHHNHLQ QQQQQQQTSC SAFEEGDYKS KRSNGGENVE EAVSVALRIG
101: LPSPSEADLI SRVSSTSVSK LTRGQYWIPT PSQILIGPTH FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGAQPT AMLRLPCYCC APGCRNNVDH
201: PRAKPLKDFR TLQTHYKRKH GIKPFVCRKC GKALAVRGDW RTHEKNCGKL WRCTCGSDFK HKRSLKDHVK AFGRGHAAHG LHRLDEEEDE PSSEIEQHSH
301: QRERERERER ATSQKRVPER AYQAQSIHGM YSGASMHLRN PLKNDLTQTS HPLFLFFVSS L
101: LPSPSEADLI SRVSSTSVSK LTRGQYWIPT PSQILIGPTH FSCPVCCKTF NRYNNMQMHM WGHGSQYRKG PESLRGAQPT AMLRLPCYCC APGCRNNVDH
201: PRAKPLKDFR TLQTHYKRKH GIKPFVCRKC GKALAVRGDW RTHEKNCGKL WRCTCGSDFK HKRSLKDHVK AFGRGHAAHG LHRLDEEEDE PSSEIEQHSH
301: QRERERERER ATSQKRVPER AYQAQSIHGM YSGASMHLRN PLKNDLTQTS HPLFLFFVSS L
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.