Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25207 | Soybean | nucleus | 40.5 | 76.35 |
| GSMUA_Achr11P... | Banana | nucleus | 49.46 | 61.61 |
| KRH22690 | Soybean | nucleus | 59.14 | 51.72 |
| GSMUA_Achr6P21380_001 | Banana | nucleus | 43.37 | 51.05 |
| KRH26622 | Soybean | nucleus | 58.06 | 50.47 |
| KRH30442 | Soybean | nucleus | 58.06 | 49.09 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 56.99 | 45.82 |
| GSMUA_Achr8P25650_001 | Banana | nucleus, plastid | 48.03 | 44.67 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 51.97 | 44.48 |
| GSMUA_Achr6P01410_001 | Banana | nucleus | 44.44 | 44.13 |
| GSMUA_AchrUn_... | Banana | plastid | 51.25 | 43.73 |
| GSMUA_Achr9P12600_001 | Banana | nucleus | 48.75 | 43.73 |
| GSMUA_Achr3P03850_001 | Banana | plastid | 50.54 | 43.65 |
| GSMUA_Achr6P03470_001 | Banana | nucleus | 49.1 | 42.95 |
| CDY22690 | Canola | nucleus | 51.61 | 42.73 |
| CDY06308 | Canola | nucleus | 51.25 | 42.43 |
| GSMUA_Achr4P01560_001 | Banana | nucleus | 48.75 | 42.24 |
| AT1G08290.1 | Thale cress | nucleus | 50.9 | 42.14 |
| Bra018638.1-P | Field mustard | nucleus | 50.54 | 41.84 |
| Bra031621.1-P | Field mustard | nucleus | 50.54 | 41.84 |
| CDX95075 | Canola | nucleus | 50.54 | 41.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.75 | 41.59 |
| CDX93575 | Canola | nucleus | 50.18 | 41.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.9 | 41.28 |
| GSMUA_Achr3P11870_001 | Banana | nucleus | 49.82 | 40.88 |
| GSMUA_Achr3P11050_001 | Banana | cytosol, nucleus, plastid | 49.46 | 40.47 |
| Os05t0444200-01 | Rice | plastid | 54.12 | 38.82 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 50.9 | 38.69 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 50.9 | 38.17 |
| Os01t0859100-01 | Rice | nucleus, plastid | 51.25 | 38.03 |
| GSMUA_Achr4P06350_001 | Banana | nucleus | 41.94 | 37.74 |
| GSMUA_Achr9P22340_001 | Banana | nucleus | 49.1 | 37.53 |
| EES03920 | Sorghum | plastid | 53.05 | 36.72 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 47.31 | 36.57 |
| Zm00001d038297_P001 | Maize | nucleus | 50.54 | 35.97 |
| Zm00001d042781_P001 | Maize | nucleus | 51.61 | 35.64 |
| EES18308 | Sorghum | plastid | 51.25 | 35.48 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 49.82 | 35.28 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 45.16 | 34.33 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 45.16 | 34.05 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 45.52 | 33.51 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 51.25 | 33.49 |
| GSMUA_Achr5P09960_001 | Banana | endoplasmic reticulum, nucleus, plastid | 46.95 | 30.39 |
| Solyc06g074360.2.1 | Tomato | nucleus | 21.86 | 28.91 |
| KRH25208 | Soybean | nucleus, plastid | 17.2 | 27.43 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 20.07 | 19.93 |
| GSMUA_Achr10P... | Banana | nucleus | 25.45 | 17.84 |
| GSMUA_Achr11P... | Banana | nucleus | 20.79 | 17.06 |
| GSMUA_Achr5P01170_001 | Banana | nucleus | 24.01 | 17.05 |
| GSMUA_Achr6P18840_001 | Banana | nucleus | 23.66 | 15.98 |
| GSMUA_Achr10P... | Banana | nucleus | 19.71 | 15.67 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr5G26210_001 | EnsemblPlants:GSMUA_Achr5P26210_001 | EnsemblPlants:GSMUA_Achr5T26210_001 |
| InterPro:IPR013087 | UniProt:M0T1U6 | PFAM:PF00096 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF58 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000296DA83 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G26210_001]
Coordinates
chr5:+:27094546..27095644
Molecular Weight (calculated)
31769.9 Da
IEP (calculated)
9.342
GRAVY (calculated)
-0.799
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGFSSHPPR FFEWLKPPSS SPPPSPVRQK AVKEEDKASK DTVALRIGLS PAWGAVFVEE EEEEKKKKKV EELCAVDSGS KYWIPTPDQI LTGPVQFSCS
101: VCTKSFNRYN NLQMHMWGHG SEYRKGPESL KGTQPMAMLK LPCYCCAHGC KNNINHPRAK PLKDFRTLQT HYKRKHGVKP FTCRKCRKAF AVRGDWRTHE
201: KNCGKLWSCT CGSDFKHKRS LNDHIRSFGK GHSHYLPSKI PQGQQTCIIR FDNGDLMCNI ISEKDYEVGE FSSSQCHGT
101: VCTKSFNRYN NLQMHMWGHG SEYRKGPESL KGTQPMAMLK LPCYCCAHGC KNNINHPRAK PLKDFRTLQT HYKRKHGVKP FTCRKCRKAF AVRGDWRTHE
201: KNCGKLWSCT CGSDFKHKRS LNDHIRSFGK GHSHYLPSKI PQGQQTCIIR FDNGDLMCNI ISEKDYEVGE FSSSQCHGT
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.