Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95075 | Canola | nucleus | 85.76 | 85.5 |
| Bra018638.1-P | Field mustard | nucleus | 85.16 | 85.16 |
| CDX93575 | Canola | nucleus | 84.87 | 84.87 |
| KRH25207 | Soybean | nucleus | 34.42 | 78.38 |
| CDY22690 | Canola | nucleus | 58.46 | 58.46 |
| CDY06308 | Canola | nucleus | 57.86 | 57.86 |
| Bra031621.1-P | Field mustard | nucleus | 57.57 | 57.57 |
| KRH26622 | Soybean | nucleus | 51.93 | 54.52 |
| KRH22690 | Soybean | nucleus | 51.34 | 54.23 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 51.04 | 52.76 |
| KRH30442 | Soybean | nucleus | 51.34 | 52.42 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 53.41 | 51.87 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 42.14 | 50.9 |
| AT1G13290.1 | Thale cress | nucleus | 40.36 | 45.03 |
| AT1G34790.1 | Thale cress | nucleus | 40.36 | 44.88 |
| AT1G51220.1 | Thale cress | nucleus | 41.84 | 41.84 |
| Solyc06g074360.2.1 | Tomato | nucleus | 24.63 | 39.34 |
| AT3G57670.1 | Thale cress | nucleus | 44.21 | 38.9 |
| Os01t0859100-01 | Rice | nucleus, plastid | 43.03 | 38.56 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 41.25 | 37.87 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 41.54 | 37.63 |
| Os05t0444200-01 | Rice | plastid | 43.03 | 37.28 |
| EES18308 | Sorghum | plastid | 43.92 | 36.72 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 39.47 | 36.24 |
| Zm00001d042781_P001 | Maize | nucleus | 43.32 | 36.14 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 39.47 | 35.95 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 41.84 | 35.79 |
| Zm00001d038297_P001 | Maize | nucleus | 41.54 | 35.71 |
| EES03920 | Sorghum | plastid | 42.43 | 35.48 |
| KRH25208 | Soybean | nucleus, plastid | 18.1 | 34.86 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 39.17 | 34.83 |
| AT3G20880.1 | Thale cress | nucleus | 41.84 | 34.22 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 41.25 | 32.55 |
| AT5G22890.1 | Thale cress | nucleus | 20.47 | 18.5 |
| AT1G34370.1 | Thale cress | nucleus | 22.55 | 15.23 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:837349 | ProteinID:AAF18247.1 | ProteinID:AEE28270.1 | EMBL:AF254448 |
| EMBL:AK118851 | ArrayExpress:AT1G08290 | EnsemblPlantsGene:AT1G08290 | RefSeq:AT1G08290 | TAIR:AT1G08290 | RefSeq:AT1G08290-TAIR-G |
| EnsemblPlants:AT1G08290.1 | TAIR:AT1G08290.1 | EMBL:AY090918 | Unigene:At.28309 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_172306.1 | PO:PO:0000293 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF58 | UniProt:Q9SGD1 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00000AC519 | Symbol:WIP3 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
Coordinates
chr1:-:2609996..2613377
Molecular Weight (calculated)
38598.0 Da
IEP (calculated)
8.954
GRAVY (calculated)
-0.771
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.