Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH22690 | Soybean | nucleus | 67.44 | 73.35 |
| KRH26622 | Soybean | nucleus | 67.72 | 73.21 |
| KRH30442 | Soybean | nucleus | 65.99 | 69.39 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 57.64 | 61.35 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 45.82 | 56.99 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 43.8 | 55.27 |
| CDY06308 | Canola | nucleus | 53.31 | 54.9 |
| CDY22690 | Canola | nucleus | 53.31 | 54.9 |
| Bra031621.1-P | Field mustard | nucleus | 52.74 | 54.3 |
| CDX95075 | Canola | nucleus | 52.74 | 54.14 |
| Bra018638.1-P | Field mustard | nucleus | 52.45 | 54.01 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 42.36 | 53.85 |
| CDX93575 | Canola | nucleus | 52.16 | 53.71 |
| AT1G08290.1 | Thale cress | nucleus | 51.87 | 53.41 |
| Solyc06g074360.2.1 | Tomato | nucleus | 30.26 | 49.76 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 45.53 | 47.31 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 46.97 | 47.25 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 44.38 | 44.9 |
| Os01t0859100-01 | Rice | nucleus, plastid | 47.84 | 44.15 |
| TraesCS3D01G364800.1 | Wheat | nucleus | 45.53 | 43.05 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 46.11 | 43.01 |
| Os05t0444200-01 | Rice | plastid | 45.53 | 40.62 |
| EES18308 | Sorghum | plastid | 46.4 | 39.95 |
| EES03920 | Sorghum | plastid | 46.11 | 39.7 |
| Zm00001d042781_P001 | Maize | nucleus | 45.82 | 39.36 |
| Zm00001d038297_P001 | Maize | nucleus | 43.8 | 38.78 |
| TraesCS1B01G285900.1 | Wheat | nucleus, plastid | 40.92 | 38.38 |
| Zm00001d010131_P001 | Maize | nucleus, plastid | 43.52 | 38.32 |
| TraesCS1D01G276200.1 | Wheat | nucleus, plastid | 40.35 | 38.15 |
| TraesCS1A01G276800.1 | Wheat | nucleus, plastid | 40.35 | 36.94 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 45.24 | 36.77 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 19.88 | 17.69 |
| VIT_18s0072g00840.t01 | Wine grape | nucleus | 22.48 | 14.8 |
| VIT_07s0141g00020.t01 | Wine grape | vacuole | 17.58 | 14.52 |
Protein Annotations
| EntrezGene:100265548 | wikigene:100265548 | MapMan:15.5.15 | Gene3D:3.30.160.60 | UniProt:A5AUF7 | EMBL:AM436044 |
| ProteinID:CAN64917 | ProteinID:CAN64917.1 | ProteinID:CCB51664 | ProteinID:CCB51664.1 | EMBL:FN595757 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | EntrezGene:LOC100265548 | wikigene:LOC100265548 | PFAM:PF13912 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF58 | SMART:SM00355 | SUPFAM:SSF57667 |
| TIGR:TC61141 | UniParc:UPI000151F65C | ArrayExpress:VIT_06s0080g00270 | EnsemblPlantsGene:VIT_06s0080g00270 | EnsemblPlants:VIT_06s0080g00270.t01 | unigene:Vvi.17737 |
| RefSeq:XP_002277045 | RefSeq:XP_002277045.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
No Description!
Coordinates
chr6:-:20064645..20067810
Molecular Weight (calculated)
39209.4 Da
IEP (calculated)
8.844
GRAVY (calculated)
-0.738
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIRNYHVGD MNLCFQPPTF IEWLKPSSSI PPPPPPSSSS SSSSSSSSSF SSSSSVPLQV HQFTNSMISS LKLPLFYQQQ QELAQETTQC LPLLSRFTET
101: KPLKEEDFGV QKESAGIKEE KLEKVTVALH IGLPSSTGDS DAQNKSFNFK EDQEPTKTSF HGYSFNTESR FWIPTPAQIL VGPMQFACSI CSKTFNRYNN
201: MQMHMWGHGS EYRKGPESLR GAQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH YKRKHGAKPF MCRKCGKTFA VKGDWRTHEK NCGKLWYCTC
301: GSDFKHKRSL KDHIRSFGKG HSPHPSHEGF DDEKECITGS EDEYVRL
101: KPLKEEDFGV QKESAGIKEE KLEKVTVALH IGLPSSTGDS DAQNKSFNFK EDQEPTKTSF HGYSFNTESR FWIPTPAQIL VGPMQFACSI CSKTFNRYNN
201: MQMHMWGHGS EYRKGPESLR GAQPAAMLRL PCYCCAQGCK NNINHPRAKP LKDFRTLQTH YKRKHGAKPF MCRKCGKTFA VKGDWRTHEK NCGKLWYCTC
301: GSDFKHKRSL KDHIRSFGKG HSPHPSHEGF DDEKECITGS EDEYVRL
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
Arabidopsis Description
WIP3Zinc finger protein WIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGD1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.