Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G364800.1 | Wheat | nucleus | 73.14 | 74.93 |
| TraesCS3B01G404000.1 | Wheat | nucleus | 71.81 | 72.58 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 25.53 | 66.67 |
| EES03920 | Sorghum | plastid | 69.68 | 65.01 |
| KRH25207 | Soybean | nucleus | 25.53 | 64.86 |
| TraesCS3A01G371700.1 | Wheat | cytosol, plastid | 72.61 | 63.93 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 26.06 | 63.64 |
| Zm00001d042781_P001 | Maize | nucleus | 66.49 | 61.88 |
| Os05t0444200-01 | Rice | plastid | 59.84 | 57.84 |
| GSMUA_Achr11P... | Banana | nucleus | 34.31 | 57.59 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 31.12 | 53.18 |
| GSMUA_Achr5P26210_001 | Banana | nucleus | 38.03 | 51.25 |
| KRH22690 | Soybean | nucleus | 42.29 | 49.84 |
| PGSC0003DMT400018308 | Potato | nucleus, plastid | 42.55 | 49.08 |
| KRH26622 | Soybean | nucleus | 41.76 | 48.91 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 44.15 | 47.84 |
| KRH30442 | Soybean | nucleus | 41.49 | 47.27 |
| CDY22690 | Canola | nucleus | 40.16 | 44.81 |
| CDX95075 | Canola | nucleus | 39.89 | 44.38 |
| Bra018638.1-P | Field mustard | nucleus | 39.63 | 44.21 |
| CDY06308 | Canola | nucleus | 39.63 | 44.21 |
| CDX93575 | Canola | nucleus | 39.36 | 43.92 |
| Bra031621.1-P | Field mustard | nucleus | 39.1 | 43.62 |
| AT1G08290.1 | Thale cress | nucleus | 38.56 | 43.03 |
| Solyc06g074360.2.1 | Tomato | nucleus | 22.61 | 40.28 |
| KRH25208 | Soybean | nucleus, plastid | 17.82 | 38.29 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 42.55 | 35.96 |
| Os08t0504000-01 | Rice | nucleus | 39.36 | 33.79 |
| Os09t0307400-00 | Rice | nucleus | 34.57 | 32.99 |
| Os09t0282300-00 | Rice | nucleus | 12.77 | 27.91 |
| Os03t0838800-00 | Rice | nucleus | 20.21 | 20.71 |
| Os04t0165200-01 | Rice | nucleus | 19.41 | 19.68 |
| Os08t0562300-01 | Rice | nucleus | 19.15 | 18.7 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 17.02 | 16.67 |
| Os12t0170400-01 | Rice | nucleus | 19.68 | 15.91 |
| Os01t0871200-03 | Rice | nucleus | 19.15 | 13.79 |
Protein Annotations
| EMBL:AK064334 | EnsemblPlants:Os01t0859100-01 | EnsemblPlantsGene:Os01g0859100 | EntrezGene:4325059 | Gene3D:3.30.160.60 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF57 | PFscan:PS50157 | ProteinID:BAF06778.1 | ProteinID:BAS75322.1 | RefSeq:XP_015625834.1 | ScanProsite:PS00028 |
| SEG:seg | SUPFAM:SSF57667 | UniParc:UPI0000DD8E07 | UniProt:Q0JHK0 | MapMan:15.5.15 | : |
Description
Similar to WIP1 protein (Fragment). (Os01t0859100-01)
Coordinates
chr1:-:37146919..37149119
Molecular Weight (calculated)
41329.7 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.596
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MRMGLRTCSA MEGEVVAASP FFEWLKPPPR PASSSSWSSS FSSSSSMASR DQETVVPGED GGGEIQEDHK SGMTCLPLLS MLEEGNSKRH EHPVKEEIMS
101: SAHAAGVVEP GVELNIGLPV TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT AVGDMFGGVG AESGVAMSSR
201: YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQMHMWGHGR EYRKGPESLK GTQTLAMLKL PCYCCAAGCK NNVAHPRARP LKDFRTLQTH YKRKHGAKPF
301: RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HLPVAESAAA AATTPADKDR IISFQR
101: SAHAAGVVEP GVELNIGLPV TGSSAQEVTM EEDDEEEDDD DVGEEEMDEW KPMHGGCKVE GDEEQYGEAV ASVEGSSSIT AVGDMFGGVG AESGVAMSSR
201: YWIPTPAQIL VGPVQFICHV CNKTFNRYNN MQMHMWGHGR EYRKGPESLK GTQTLAMLKL PCYCCAAGCK NNVAHPRARP LKDFRTLQTH YKRKHGAKPF
301: RCRRCAKPFA VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGAH HLPVAESAAA AATTPADKDR IISFQR
001: MLFSTVLSHR TLYILTCPNT LIHSYTHPHI HAYLAFTGFL TQLHHLEISC LLLLFFSLSS LLKLMADPDC IFRNGYVDYY NYSFNYATSL SRIYNSHDSF
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
101: YYPHQTTNPN INENPNLTSP DSPPLREALP LLSLSPIHKH QEPTANHHEY YFMETTETSS NSNFLDQCQD SYRHDVTVDL HLGLPNLGDG GSSSSDVVLD
201: STDHQEGHHD HHQDQGLEVT MASDHDDEHG GLQRGNHLHH FWIPTPSQIL MGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GTQPTAMLKL
301: PCYCCAPGCK NNIDHPRARP LKDFRTLQTH YKRKHGVRPF ACRRCGKAFA VKGDWRTHEK NCGKLWYCSC GSDFKHKRSL KDHVKAFGNG HVPCCGIDHE
401: EEEAASDVEQ QE
Arabidopsis Description
WIP4Zinc finger protein WIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W030]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.