Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 43.18 | 65.97 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 44.55 | 63.64 |
| Os01t0859100-01 | Rice | nucleus, plastid | 53.18 | 31.12 |
| Os05t0444200-01 | Rice | plastid | 54.55 | 30.85 |
| Os09t0307400-00 | Rice | nucleus | 55.0 | 30.71 |
| Os08t0504000-01 | Rice | nucleus | 59.09 | 29.68 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 59.09 | 29.21 |
| Os04t0165200-01 | Rice | nucleus | 30.91 | 18.33 |
| Os03t0838800-00 | Rice | nucleus | 30.45 | 18.26 |
| HORVU7Hr1G094740.1 | Barley | cytosol, extracellular, mitochondrion | 15.45 | 16.67 |
| Os09t0282300-00 | Rice | nucleus | 12.73 | 16.28 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 27.73 | 15.89 |
| Os08t0562300-01 | Rice | nucleus | 27.73 | 15.84 |
| Os12t0170400-01 | Rice | nucleus | 31.82 | 15.05 |
| Os01t0871200-03 | Rice | nucleus | 29.09 | 12.26 |
Protein Annotations
| EnsemblPlants:Os02t0196100-01 | EnsemblPlantsGene:Os02g0196100 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF61 | PFscan:PS50157 | ProteinID:BAD25257.1 |
| ProteinID:BAD25270.1 | ProteinID:BAF08105.2 | ProteinID:BAS77456.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI00003B43E9 | UniProt:Q6H7M9 | MapMan:15.5.15 | : | : |
Description
ARABINOGALACTAN PROTEIN 30Similar to T6J4.5 protein (WIP6 protein). (Os02t0196100-01)
Coordinates
chr2:-:5364450..5366226
Molecular Weight (calculated)
23482.8 Da
IEP (calculated)
10.944
GRAVY (calculated)
-0.532
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MANHGASASS TGVAGDDGGG GAMAGVGVEV ESVRRSGGGG GGGQYWIPTA AQILAGATQF SCPVCRKTFN RYNNLQMHMW GHGSQYRRGG TAALRGAQPT
101: AMLRLPCYCC AAGCRNHIDH PRARPLKDFR TLQTHYRRRH GARDFACRRC AKRFAVRGDW RTHEKNCGRL WRCACGAHFR HKRSLNDHAR AFGAAHAHAG
201: AGAGAEDDGR AAAAAAGVLR
101: AMLRLPCYCC AAGCRNHIDH PRARPLKDFR TLQTHYRRRH GARDFACRRC AKRFAVRGDW RTHEKNCGRL WRCACGAHFR HKRSLNDHAR AFGAAHAHAG
201: AGAGAEDDGR AAAAAAGVLR
001: MYNNNQYSFS GDEDSVVLSL GPPGQQYPSH NKPTSTKPSS DHEFNHPLTN PNGVTVALHI GPPSSDKETL SGGNNQEGLT ARQGQYWIPS LSQILVGPTQ
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
101: FSCSVCNKTF NRFNNMQMHM WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK HGAKPFRCRK KCEKTFAVRG
201: DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VRAFGDGHAA HTVSDRVVGI GDADEDDEEE EEEEEDDVEE EDAHEENVRG EKNYGIRYDH FRRYGQISDD
301: NY
Arabidopsis Description
WIP6Zinc finger protein WIP6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX68]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.