Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0621300-01 | |
| Os02t0258300-01 | |
| Os05t0586400-01 | |
| Os06t0524300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | Os01t0621300-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os02t0258300-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os05t0586400-01 | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Os06t0524300-01 | AT4G01090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P15330_001 | Banana | cytosol | 37.74 | 49.82 |
| GSMUA_Achr11P... | Banana | nucleus | 42.05 | 45.88 |
| KRH22822 | Soybean | plastid | 31.81 | 42.45 |
| Os08t0562300-01 | Rice | nucleus | 43.94 | 42.34 |
| CDY09179 | Canola | nucleus | 34.23 | 39.2 |
| PGSC0003DMT400001105 | Potato | nucleus | 33.42 | 38.99 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 38.01 | 36.15 |
| Os09t0282100-00 | Rice | cytosol, mitochondrion, nucleus | 13.75 | 35.42 |
| AT5G22890.1 | Thale cress | nucleus | 35.31 | 35.12 |
| CDY26965 | Canola | nucleus | 34.5 | 34.97 |
| CDY26966 | Canola | nucleus | 35.31 | 34.84 |
| CDX98183 | Canola | nucleus | 35.31 | 34.84 |
| Bra002438.1-P | Field mustard | nucleus | 35.31 | 34.84 |
| CDX74505 | Canola | nucleus | 35.31 | 34.84 |
| CDY31715 | Canola | nucleus | 35.31 | 34.84 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 35.58 | 34.38 |
| CDY09178 | Canola | nucleus | 33.96 | 34.15 |
| CDY69109 | Canola | nucleus | 34.23 | 34.14 |
| Os09t0485600-01 | Rice | cytosol, mitochondrion, nucleus | 14.02 | 33.77 |
| Os02t0196100-01 | Rice | cytosol, extracellular, nucleus | 18.33 | 30.91 |
| Os03t0838800-00 | Rice | nucleus | 29.38 | 29.7 |
| Os02t0572900-01 | Rice | cytosol, extracellular, nucleus | 28.84 | 27.86 |
| Bra020224.1-P | Field mustard | nucleus | 21.02 | 25.91 |
| Bra020223.1-P | Field mustard | nucleus | 20.49 | 25.59 |
| Os12t0170400-01 | Rice | nucleus | 30.19 | 24.09 |
| Os01t0871200-03 | Rice | nucleus | 29.11 | 20.69 |
| Os09t0307400-00 | Rice | nucleus | 20.75 | 19.54 |
| Os01t0859100-01 | Rice | nucleus, plastid | 19.68 | 19.41 |
| Os05t0444200-01 | Rice | plastid | 19.68 | 18.77 |
| Bra002437.1-P | Field mustard | nucleus | 11.86 | 17.67 |
| Os08t0504000-01 | Rice | nucleus | 18.87 | 15.98 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 18.33 | 15.28 |
| Os09t0282300-00 | Rice | nucleus | 4.04 | 8.72 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:BAH92488.1 | ProteinID:BAS87867.1 | ProteinID:CAD39561.2 | InterPro:EF_Hand_1_Ca_BS |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 | EnsemblPlantsGene:Os04g0165200 | EnsemblPlants:Os04t0165200-01 |
| PFAM:PF00096 | ScanProsite:PS00018 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 |
| UniProt:Q7XXA5 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000021C841 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| SEG:seg | : | : | : | : | : |
Description
Zinc finger, C2H2-type domain containing protein. (Os04t0165200-01)
Coordinates
chr4:-:4424830..4427681
Molecular Weight (calculated)
38886.8 Da
IEP (calculated)
7.884
GRAVY (calculated)
-0.230
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA
101: NAASSASFRR GVAFADDAHA AGGVQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD GDGDGEVDVV ELEASYLLAR
201: YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TAAALTSTGA GMRAAARRCS YSCPAEGCRW NRRHPRFQAL KSVVCAKNHY RRSHCPKMYV CGRCGGKQFA
301: VLSDLRTHEK HCGELRWLCS CGTFFSRKDK LMGHVALFAA GHAPVPVAPE ASPSTTTTGT TTDRSRTGLI D
101: NAASSASFRR GVAFADDAHA AGGVQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD GDGDGEVDVV ELEASYLLAR
201: YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TAAALTSTGA GMRAAARRCS YSCPAEGCRW NRRHPRFQAL KSVVCAKNHY RRSHCPKMYV CGRCGGKQFA
301: VLSDLRTHEK HCGELRWLCS CGTFFSRKDK LMGHVALFAA GHAPVPVAPE ASPSTTTTGT TTDRSRTGLI D
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.