Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000943.1-P | |
| Bra017007.1-P | |
| Bra017974.1-P | |
| Bra037384.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G22890.1 | Bra017007.1-P | AT2G19650.1 | 21798944 |
| AT5G22890.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G22890.1 | Bra000943.1-P | AT4G01090.1 | 21798944 |
| AT5G22890.1 | Bra037384.1-P | AT4G01090.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31715 | Canola | nucleus | 99.73 | 99.73 |
| CDX98183 | Canola | nucleus | 99.73 | 99.73 |
| CDX74505 | Canola | nucleus | 99.73 | 99.73 |
| CDY26966 | Canola | nucleus | 98.67 | 98.67 |
| Bra020224.1-P | Field mustard | nucleus | 57.71 | 72.09 |
| Bra020223.1-P | Field mustard | nucleus | 56.12 | 71.04 |
| Bra002437.1-P | Field mustard | nucleus | 46.81 | 70.68 |
| AT5G22890.1 | Thale cress | nucleus | 69.68 | 70.24 |
| GSMUA_Achr1P15330_001 | Banana | cytosol | 37.23 | 49.82 |
| KRH22822 | Soybean | plastid | 36.17 | 48.92 |
| PGSC0003DMT400001105 | Potato | nucleus | 39.36 | 46.54 |
| Solyc11g066420.1.1 | Tomato | nucleus, plastid | 45.21 | 44.27 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 44.41 | 42.82 |
| GSMUA_Achr11P... | Banana | nucleus | 38.3 | 42.35 |
| TraesCS1A01G060200.1 | Wheat | nucleus | 38.3 | 37.5 |
| Os08t0562300-01 | Rice | nucleus | 38.3 | 37.4 |
| TraesCS1D01G061200.1 | Wheat | nucleus | 37.77 | 36.69 |
| TraesCS1B01G078700.1 | Wheat | nucleus | 38.03 | 36.48 |
| Zm00001d031895_P001 | Maize | nucleus | 39.63 | 35.56 |
| Os04t0165200-01 | Rice | nucleus | 34.84 | 35.31 |
| OQU80698 | Sorghum | nucleus | 39.63 | 35.06 |
| Bra040971.1-P | Field mustard | nucleus | 31.12 | 27.46 |
| Bra003295.1-P | Field mustard | nucleus | 17.02 | 26.02 |
| Bra036750.1-P | Field mustard | nucleus | 32.71 | 25.05 |
| Bra028067.1-P | Field mustard | nucleus | 17.82 | 23.34 |
| Bra007346.1-P | Field mustard | nucleus | 17.55 | 21.5 |
| Bra019822.1-P | Field mustard | nucleus | 17.29 | 21.1 |
| Bra018902.1-P | Field mustard | plastid | 18.62 | 20.77 |
| Bra031239.1-P | Field mustard | nucleus | 19.68 | 20.61 |
| Bra030450.1-P | Field mustard | nucleus | 18.62 | 20.59 |
| Bra018638.1-P | Field mustard | nucleus | 18.35 | 20.47 |
| Bra023918.1-P | Field mustard | nucleus | 19.41 | 20.33 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 19.41 | 20.05 |
| Bra031621.1-P | Field mustard | nucleus | 16.22 | 18.1 |
Protein Annotations
| EnsemblPlants:Bra002438.1 | EnsemblPlants:Bra002438.1-P | EnsemblPlantsGene:Bra002438 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF41 |
| PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00025442C7 |
| UniProt:M4CE07 | MapMan:15.5.15 | : | : | : | : |
Description
AT5G22890 (E=8e-132) | zinc finger (C2H2 type) family protein
Coordinates
chrA10:+:9590493..9591623
Molecular Weight (calculated)
42986.6 Da
IEP (calculated)
7.225
GRAVY (calculated)
-0.683
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQEEHMNQG RYIMSQVEGS MSCFSETNSS STIYMNPMMA ATRSSGEDNG IQLSLLLNLS TIQDKVHEIQ SLVNFFMISP NNNNQSSEST SSLAAANVES
101: LVQDIITAAS SMMLTCQQLQ SSTNSNSNID TNQTADAMVM EFSQDFDPDR DFMGESSINI LDVQERRHVS FLDQTTQNLD WYGTETTNPK KDIHRSKSRL
201: GNYEIVELSV EDLLAKYTHY CQICGKGFKR DANLRMHMRA HGDEYKTREA LISPTSRDKN VEYSSMRYYY SCPHQGCRWN QRHEKFQPLK SVICAKNHYK
301: RSHCPKIYMC TRCNVKHFSV LSDLRTHEKH CGDIKWVCSC GTRFSRKDKL MSHVSLFSGH SPAHEPSQQQ PPMITP
101: LVQDIITAAS SMMLTCQQLQ SSTNSNSNID TNQTADAMVM EFSQDFDPDR DFMGESSINI LDVQERRHVS FLDQTTQNLD WYGTETTNPK KDIHRSKSRL
201: GNYEIVELSV EDLLAKYTHY CQICGKGFKR DANLRMHMRA HGDEYKTREA LISPTSRDKN VEYSSMRYYY SCPHQGCRWN QRHEKFQPLK SVICAKNHYK
301: RSHCPKIYMC TRCNVKHFSV LSDLRTHEKH CGDIKWVCSC GTRFSRKDKL MSHVSLFSGH SPAHEPSQQQ PPMITP
001: MHIHMMNRDE HIAKKVEGSI SSFSGETSTS SKQIYVNPVT TTGTKSMEDD DVSLSLLYNL STLHEKVHQI QSLVSFYMVS TNNINQSSGS TSLAVANIGS
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
101: LVQEIITAAS SMLYTCQQLQ IGSNNNNNDI DNDQTVDAMV LEFSRQETDP GHDFVQESTN LFGVQERGQI SFPDQNLDWY NTETINPKKD KHRSKPSSGS
201: YDILELDVAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALI SPTSQDKKGG YSLKKHYYSC PQHGCRWNQR HEKFQPLKSV ICAKNHYKRS
301: HCPKMYMCRR CSVKHFSVLS DLRTHEKHCG DIKWVCSCGT KFSRKDKLMS HVSLFLGHVP AHGSSKPPTI TLK
Arabidopsis Description
STOP2Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.