Factsheet for Bra017007.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005397.1-P
Bra014221.1-P
Bra015721.1-P
Bra017489.1-P
Bra021674.1-P
Bra022817.1-P
Bra024948.1-P
Bra029190.1-P
Bra035724.1-P
Bra039652.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19650.1	Bra014221.1-P	AT1G49850.1	21798944
AT2G19650.1	Bra039652.1-P	AT1G49850.1	21798944
AT2G19650.1	Bra015721.1-P	AT1G76760.1	21798944
AT2G19650.1	Bra021674.1-P	AT2G30880.1	21798944
AT2G19650.1	Bra022817.1-P	AT2G30880.1	21798944
AT2G19650.1	Bra005397.1-P	AT2G34720.1	21798944
AT2G19650.1	Bra017489.1-P	AT5G47370.1	21798944
AT2G19650.1	Bra024948.1-P	AT5G47370.1	21798944
AT2G19650.1	Bra029190.1-P	AT5G51100.1	21798944
AT2G19650.1	Bra035724.1-P	AT5G51100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52927	Canola	cytosol	63.81	98.67
AT2G19650.1	Thale cress	cytosol	56.78	48.53
Bra040595.1-P	Field mustard	cytosol	31.9	43.36
Bra024127.1-P	Field mustard	nucleus	29.67	42.3
Bra025591.1-P	Field mustard	nucleus	39.79	39.26
Bra028463.1-P	Field mustard	cytosol	33.79	36.75
Bra033522.1-P	Field mustard	cytosol	27.96	33.2
Bra040143.1-P	Field mustard	nucleus	34.82	33.17
Bra020274.1-P	Field mustard	nucleus	35.33	32.91
Bra011134.1-P	Field mustard	mitochondrion	37.91	31.89
Bra025569.1-P	Field mustard	nucleus	26.93	29.46
Bra001113.1-P	Field mustard	cytosol	22.81	28.85
KRG95394	Soybean	nucleus	25.39	26.1
KRH67075	Soybean	nucleus	24.36	24.91
Bra036288.1-P	Field mustard	cytosol, nucleus, plasma membrane	42.88	14.94

Protein Annotations

EnsemblPlants:Bra017007.1	EnsemblPlants:Bra017007.1-P	EnsemblPlantsGene:Bra017007	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:DC1	InterPro:Znf_PHD	PFAM:PF03107	SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI0002544F3A
UniProt:M4DKH7	MapMan:35.2	:	:	:	:

Description

AT2G04680 (E=3e-168) | DC1 domain-containing protein

Coordinates

chrA04:-:17170753..17172670

Molecular Weight (calculated)

66422.1 Da

IEP (calculated)

6.642

GRAVY (calculated)

-0.321

Length

583 amino acids

Sequence
(BLAST)

001: MEEIEVPRHE HPVRRFTRFL SGCCGAHCTD HDRIYGGYRC NEPGCDKAFH KECAEALPEI INSFHPEHPL KLILDYSCPN ACSLCQHKFG IGYSCSLCDS
101: HIDLKCVRIP PPTENSCLHE HPLKLSHGEP SDSLEYDICG DCKTNPPPVC VVSSTTHEHQ LHLVPRRMDF TCNACGTLGD RSPYFCLQCN FMIHRECIDL
201: PRVININRHD HRISYTRRLG HGESPWKCGV CRKKVDGFYG AYASSKVPSF VVHARCATRE DVWDNVELEG MPEEEVIAPF EVVDDTTIRH FSHDHNLHIN
301: KDGQILHENI VCEACVFQIG SEYFYSCKNC DFILHEKCAN LPRKKRHVCS NQPLTLETVS RAATCSLCDK RCSGFRYESY NSFKVITLDV QCGSISEPFV
401: HESHPHPLYY VSVSDSWGLK NRSKLSCDEC DFSLEIKDAL LPKKVMRNRY DDHPLFLSYG ESNVNGEYWC EACEAKLHPK EWFYTCNDCG ITLHVPCVVG
501: DFSYIKHGTA ALLYTKGVHE QLHEACSVSN TSICRPFCVW CASRCMLPSI IKFPLSGGFV YVCSEKCFEK LEDMIGKHFV ILE

Best Arabidopsis Sequence Match ( AT2G19660.2 )
(BLAST)

001: MPTLRDPIET KIEKKNITKE ICGLIWITME KVEVPPIHNH PLLPFTRFSY KACKGCGYVG YIYGGYHCNE LGCESVFHKE CADPLPEINH YSHPDHPLKL
101: LINVEPLASC SQCPSSFENG YLCSICDFKL DFRCATRLPL EFILEESTVH EHPIQLSDGT RDGFVQLCKT CKWGVFDAVH YKCNKCDLRF HVECTKLFPQ
201: ASHVLHPQHP LKLLRCEEAP DYADNKCLLC GNKFDGRIHH CDVCNFTICG GCMENPPPLS VVSPTTHEHQ LYLLSKPLGF TCNACGTQAD QSPYFCLQCN
301: FMIHWECIDL PRVININRHD HRISYTRRLG HGQNTCGVCR KKVDGFYGGY SCSKCSNYVV HSRCATDEDV WDMIELEGTP EEPEEDAPFE VIDDNTIKHF
401: SHDHNLVINK DGRILHESTL CKACVFQICS DAFYSCENCD FILHQKCANL PRKKRHVCDN LPFTLVTNDT SDETSCDLCW QSFTGFRYEC LTRMVTLDVR
501: CGSIREPLVH QSHQHPLYFS KRSSKSCTEC GKNMDLDIGS FSCDECDYSL DFKCALLPQK VKWHRYDDHP LYLSCGESSV DGEYWCEACE TKVNSKKWFY
601: TCNDCGVILH ISCVVGDFSY YMPGSKIGWE EDLVVSNTSM CRPFCYVCNS QCKLPSIVKV VSKADVVLYI CSLNCYYNFN RSNNYSSSDW

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:TAIR;Acc:AT2G19660]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.