CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77762
CDX84285
CDX87569
CDX88314
CDX97786
CDY05836
CDY16531
CDY20854
CDY23978
CDY25971
CDY29635
CDY31636
CDY32644
CDY32837
CDY38848
CDY41046
CDY61552
CDY64679
CDY70727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G19650.1	CDY16531	AT1G49850.1	21798944
AT2G19650.1	CDY20854	AT1G49850.1	21798944
AT2G19650.1	CDY32837	AT1G49850.1	21798944
AT2G19650.1	CDY61552	AT1G49850.1	21798944
AT2G19650.1	CDX87569	AT1G76760.1	21798944
AT2G19650.1	CDX88314	AT1G76760.1	21798944
AT2G19650.1	CDX97786	AT2G30880.1	21798944
AT2G19650.1	CDY23978	AT2G30880.1	21798944
AT2G19650.1	CDY29635	AT2G30880.1	21798944
AT2G19650.1	CDX84285	AT2G34720.1	21798944
AT2G19650.1	CDY31636	AT2G34720.1	21798944
AT2G19650.1	CDX77762	AT5G47370.1	21798944
AT2G19650.1	CDY25971	AT5G47370.1	21798944
AT2G19650.1	CDY41046	AT5G47370.1	21798944
AT2G19650.1	CDY64679	AT5G47370.1	21798944
AT2G19650.1	CDY05836	AT5G51100.1	21798944
AT2G19650.1	CDY32644	AT5G51100.1	21798944
AT2G19650.1	CDY38848	AT5G51100.1	21798944
AT2G19650.1	CDY70727	AT5G51100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017007.1-P	Field mustard	nucleus	98.67	63.81
CDY48718	Canola	cytosol	47.48	48.25
CDX93183	Canola	cytosol	84.88	48.05
CDX97701	Canola	cytosol	23.87	42.45
CDX67463	Canola	cytosol	42.97	34.91
AT2G19650.1	Thale cress	cytosol	63.13	34.9
CDY52789	Canola	cytosol	37.14	34.48
CDY29992	Canola	cytosol	23.87	34.35
CDX74184	Canola	plasma membrane	35.01	32.2
CDY63460	Canola	cytosol, mitochondrion	35.28	31.97
CDY06776	Canola	cytosol	24.14	31.93
CDY46706	Canola	mitochondrion	41.38	29.27
CDY09238	Canola	cytosol	36.6	29.05
CDY09240	Canola	cytosol	36.34	28.84
CDY22036	Canola	cytosol	44.56	28.19
CDX74183	Canola	cytosol	25.46	27.91
CDY41709	Canola	peroxisome	38.46	27.57
CDY22052	Canola	nucleus	45.36	27.01
CDY30196	Canola	cytosol	28.91	26.65
CDY22034	Canola	endoplasmic reticulum	44.03	26.39
CDY42579	Canola	nucleus	19.1	26.28
CDX71062	Canola	cytosol	43.5	26.2
CDY52787	Canola	nucleus	43.77	26.15
CDX88733	Canola	cytosol	42.97	25.96
CDY69979	Canola	nucleus	43.77	25.9
CDY21921	Canola	plastid	25.99	25.79
CDY36839	Canola	cytosol	40.58	25.29
CDX82703	Canola	cytosol	64.46	25.18
CDY65338	Canola	cytosol	44.56	25.07
CDY63456	Canola	cytosol	25.99	24.81
CDY51540	Canola	nucleus	33.16	24.37
CDY64703	Canola	cytosol	42.71	24.25
CDY27940	Canola	cytosol	35.81	23.94
CDY58516	Canola	nucleus	31.83	23.9
CDY30007	Canola	cytosol, nucleus, plastid	41.38	23.46
CDY28703	Canola	cytosol	30.77	23.29
CDY22883	Canola	cytosol	39.26	22.66
CDY63290	Canola	cytosol	29.18	21.91
CDY29993	Canola	cytosol	35.81	21.88
CDY43524	Canola	cytosol	29.18	21.74
CDY40661	Canola	cytosol	42.44	21.0
CDY21132	Canola	cytosol	33.95	20.91
CDY50383	Canola	cytosol	44.3	19.81
CDY22035	Canola	cytosol	45.09	19.19
CDY27938	Canola	cytosol	21.22	18.22
CDY44574	Canola	cytosol	22.81	17.84
CDY36353	Canola	plastid	14.59	17.63
CDY50382	Canola	cytosol	45.62	17.34
CDY44167	Canola	cytosol	22.28	17.07
KRG95394	Soybean	nucleus	24.14	16.05
KRH67075	Soybean	nucleus	23.87	15.79
CDY60784	Canola	cytosol	13.26	14.88

Protein Annotations

EnsemblPlants:CDY52927	EnsemblPlantsGene:GSBRNA2T00008110001	GO:A0A078ISG8	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0046872	GO:GO:0047134	InterPro:DC1	InterPro:Znf_PHD	PANTHER:PTHR32410	PFAM:PF03107
ProteinID:CDY52927	ProteinID:CDY52927.1	SMART:SM00249	SUPFAM:SSF57889	UniParc:UPI0004EE837D	UniProt:A0A078ISG8
MapMan:35.2	:	:	:	:	:

Description

BnaA04g29340DBnaA04g29340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISG8]

Coordinates

chrLK033142:-:51880..53563

Molecular Weight (calculated)

43008.2 Da

IEP (calculated)

6.606

GRAVY (calculated)

-0.381

Length

377 amino acids

Sequence
(BLAST)

001: MEEIEVPRHE HPVRPFTRFL CGCCGAHCTD HERIYGGYRC NEPGCDKAFH KECAEALPEI INSFHPEHPL KLILDYSCPN ACSLCQHKFG IGYSCSLCDF
101: HIDLKCVRIP PPTENSCLHE HPLKLSHGEP SDSLEYDICG DCKTNPPPVC VVSSTTHEHQ LHLVPRRMDF TCNACGTLGD RSPYFCLQCN FMIHRECIDL
201: PRVININRHD HRISYTRRLG HGESPWKCGV CRKKVDGFYG AYASSKVPSF VVHARCATRE DVWDNVELEG MPEEEVIAPF EVVDDTTIRH FSHDHNLHIN
301: KDGQILHENI VCEACVFQIG SEYFYSCKNC DFILHEKCAN LPRKKRHVCS NQPLTLETVS RAATCSLCDK QHFVILE

Best Arabidopsis Sequence Match ( AT2G04680.1 )
(BLAST)

001: MEIVEVSPIH KHPLLPITRF SREHCKCNVC GSVGYIYGGY CCNEVGCESM FHKECVESLS EIKHTSHPDH PLKLLISDKA SFCSRCEGRF ENGYICSICD
101: FKLDFRCAKG PAPLLILEKS NLHEHLLEFF VGWHSWKGHR ECKACGGAGF RGYRWYGCYQ CDTLFHGECA EFFPEAKHTS HPQHTLKHIT SEEAPDYADN
201: KCLLCEEEFD QQHPKIHHCD VCNFTICRAC MKNAPPVRIE SLTTHEHQLH LVPRRIDFTC NACGTLGDRS PYFCLQCNFM IHRQCIDLPR VININRHDHR
301: ISYTRRLGHG EWKCKVCRKK VDGFYGAYTC LKCPSFVVHS LCATRNDVWD MIELEGMQEE EEIAPYEMID ANTIKHFSHD HNLQINNDGH GRIQPENIVC
401: EACVFQILSE PFYSCNQCSF ILHEKCANHP RKKRHVCNNT SFILFTDSCN KANASCGLCK QHFTGFRYES GPYVTIDVRC AAILDTIEHG SHQHPLYYYT
501: TFDWKPCSRC REEGAVLFRC DECDYILDGN CALFPKKVMR NRYDDHLLFL SFGDKNVSGD YWCEACETKV NPKEWFYTCN DCGTILHISC VVGDFSYIMP
601: GSHITTWRAN VVSNTSICRP VCYMCNSRCK LPSVLKLSDT KVDVYLCSFK CAYFIRK

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SJ91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.