CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01920.1	CDY11652	AT1G69810.1	21798944
AT4G01920.1	CDY56082	AT1G69810.1	21798944
AT4G01920.1	CDY68857	AT1G69810.1	21798944
AT4G01920.1	CDY46357	AT3G28715.1	21798944
AT4G01920.1	CDX86029	AT3G45640.1	21798944
AT4G01920.1	CDX99153	AT3G45640.1	21798944
AT4G01920.1	CDY21814	AT3G48210.1	21798944
AT4G01920.1	CDY48156	AT3G48210.1	21798944
AT4G01920.1	CDY53953	AT3G48210.1	21798944
AT4G01920.1	CDY66333	AT4G15700.1	21798944
AT4G01920.1	CDY03408	AT4G24900.1	21798944
AT4G01920.1	CDY34322	AT4G24900.1	21798944
AT4G01920.1	CDX81261	AT5G64850.1	21798944
AT4G01920.1	CDY08844	AT5G64850.1	21798944
AT4G01920.1	CDY14517	AT5G64850.1	21798944
AT4G01920.1	CDY18692	AT5G64850.1	21798944
AT4G01920.1	CDY31298	AT5G64850.1	21798944
AT4G01920.1	CDY46828	AT5G64850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97701	Canola	cytosol	33.68	60.38
AT4G01925.1	Thale cress	cytosol	36.05	48.93
AT4G11540.1	Thale cress	cytosol	60.79	44.0
CDY22036	Canola	cytosol	67.11	42.79
CDY69979	Canola	nucleus	71.05	42.39
CDY52787	Canola	nucleus	69.21	41.68
CDY65338	Canola	cytosol	70.53	40.0
AT4G11390.2	Thale cress	cytosol	56.05	39.01
AT4G01920.1	Thale cress	cytosol	65.79	37.99
CDY22034	Canola	endoplasmic reticulum	62.63	37.84
CDY52789	Canola	cytosol	39.74	37.19
AT4G01930.1	Thale cress	cytosol	63.68	37.12
AT4G01910.1	Thale cress	cytosol	61.58	35.94
AT4G01740.1	Thale cress	cytosol	60.26	35.12
AT4G11550.1	Thale cress	cytosol	60.26	34.28
AT4G02190.1	Thale cress	cytosol	58.95	33.99
AT4G01760.1	Thale cress	cytosol	59.21	33.73
CDY30196	Canola	cytosol	34.47	32.03
CDY29992	Canola	cytosol	21.58	31.3
CDY63456	Canola	cytosol	31.84	30.63
CDY50383	Canola	cytosol	67.63	30.49
CDY22035	Canola	cytosol	69.74	29.91
CDY51540	Canola	nucleus	40.0	29.63
CDY06776	Canola	cytosol	21.58	28.77
CDY22052	Canola	nucleus	47.89	28.75
CDY28703	Canola	cytosol	37.37	28.51
CDY41709	Canola	peroxisome	38.16	27.57
CDY58516	Canola	nucleus	34.74	26.29
CDY46706	Canola	mitochondrion	36.84	26.27
CDY60784	Canola	cytosol	23.16	26.19
CDY50382	Canola	cytosol	67.89	26.01
CDY52927	Canola	cytosol	25.79	25.99
CDX74183	Canola	cytosol	23.16	25.58
CDY27940	Canola	cytosol	37.89	25.53
CDY48718	Canola	cytosol	24.47	25.07
CDY63290	Canola	cytosol	32.37	24.5
CDY36839	Canola	cytosol	38.95	24.46
CDY09238	Canola	cytosol	29.74	23.79
CDY09240	Canola	cytosol	29.74	23.79
CDY21132	Canola	cytosol	38.16	23.69
AT4G02180.1	Thale cress	cytosol	61.58	23.66
CDY29993	Canola	cytosol	37.37	23.01
CDX67463	Canola	cytosol	27.89	22.84
CDX93183	Canola	cytosol	39.47	22.52
CDY64703	Canola	cytosol	37.89	21.69
CDY63460	Canola	cytosol, mitochondrion	23.16	21.15
CDX88733	Canola	cytosol	34.74	21.15
CDY30007	Canola	cytosol, nucleus, plastid	36.84	21.05
CDX71062	Canola	cytosol	34.47	20.93
CDX74184	Canola	plasma membrane	21.84	20.24
CDY22883	Canola	cytosol	34.47	20.06
CDY44167	Canola	cytosol	25.53	19.72
CDY43524	Canola	cytosol	26.05	19.57
CDY36353	Canola	plastid	15.53	18.91
CDY42579	Canola	nucleus	13.42	18.61
CDY27938	Canola	cytosol	20.79	18.0
CDY40661	Canola	cytosol	35.26	17.59
CDY44574	Canola	cytosol	22.11	17.43
KRG95394	Soybean	nucleus	24.74	16.58
KRH67075	Soybean	nucleus	23.68	15.79
CDX82703	Canola	cytosol	35.26	13.89

Protein Annotations

EnsemblPlants:CDY21921	EnsemblPlantsGene:GSBRNA2T00018249001	GO:A0A078G951	InterPro:DC1	PANTHER:PTHR32410	PFAM:PF03107
ProteinID:CDY21921	ProteinID:CDY21921.1	SEG:seg	SUPFAM:SSF57889	UniParc:UPI0004EEF0A0	UniProt:A0A078G951
MapMan:35.2	:	:	:	:	:

Description

BnaC09g00270DBnaC09g00270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G951]

Coordinates

chrLK032126:-:133151..134870

Molecular Weight (calculated)

43036.0 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.417

Length

380 amino acids

Sequence
(BLAST)

001: MASSTDSPCF AKPSATLFFS RGIQTKKTSS KELAKLIMPE ATPYNSEFGI SEFTILKLYV NFTFQNHDHQ LTLLPRLDSF TCNACGLKGD RSPYACFDCG
101: FMVHQDCLAL PRVININRHD HRVSHTSVLG DGAMNSVCGV CHKKVDWTWG GFSCKRCPGY VVHSKCATRK DVWNGKELEG VPEEEEDTEP YVVIDENTIQ
201: HFSHKEHYLR FNENGVLYED NKRCSACTHP IGLQSFYGFT NKELEVFDCY ACKRKSNGFM YKHGKKKLDV MCGSISEPFT HPSHPHHPLY YSLIEKEELC
301: NGCNGREYFI LKCIGGDCGF VLGFTCATLP QVVNHRVEDH PLSLCYGEEE EASGKYWLTF VREKPIQTTG STHFSTCLNN

Best Arabidopsis Sequence Match ( AT4G01910.1 )
(BLAST)

001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G

Arabidopsis Description

Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.