CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019533.1-P	Field mustard	nucleus	95.97	96.52
CDY53953	Canola	cytosol	80.4	87.74
AT3G48210.1	Thale cress	cytosol	65.71	72.38
CDY48156	Canola	cytosol	37.18	51.6
KRH63590	Soybean	cytosol	36.6	40.84
VIT_17s0000g08910.t01	Wine grape	cytosol	36.89	40.25
KRH57107	Soybean	cytosol	34.01	38.69
PGSC0003DMT400046630	Potato	nucleus	34.01	38.69
Solyc03g112550.2.1	Tomato	nucleus	34.01	37.34
Solyc06g071600.2.1	Tomato	cytosol	31.7	35.03
KRH03250	Soybean	cytosol	25.94	35.02
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	31.7	34.92
KRH54356	Soybean	cytosol	23.63	33.74
Zm00001d011781_P001	Maize	plastid	19.6	29.06
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	26.22	28.26
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	25.65	27.99
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	25.65	27.64
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	25.07	27.02
TraesCS1D01G031600.1	Wheat	nucleus	24.21	26.67
GSMUA_Achr10P...	Banana	nucleus	26.51	25.77
TraesCS1B01G037800.1	Wheat	nucleus	24.5	25.76
OQU88270	Sorghum	cytosol, nucleus, plastid	21.33	25.0
Os05t0110700-01	Rice	nucleus	25.36	24.38
Os01t0973200-00	Rice	cytosol	23.63	23.77
Zm00001d041956_P002	Maize	nucleus	20.75	23.08
Zm00001d011068_P001	Maize	plastid	21.04	21.86
HORVU1Hr1G004480.4	Barley	mitochondrion	23.34	18.75
EES18884	Sorghum	plastid	16.43	18.15

Protein Annotations

EnsemblPlants:CDY21814	EnsemblPlantsGene:GSBRNA2T00016369001	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	ProteinID:CDY21814	ProteinID:CDY21814.1	UniParc:UPI0004EF24D6	UniProt:A0A078G8U4	MapMan:13.3.3.2.2.3

Description

BnaA06g20830DBnaA06g20830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8U4]

Coordinates

chrLK032124:+:559918..562261

Molecular Weight (calculated)

38607.6 Da

IEP (calculated)

9.081

GRAVY (calculated)

-0.588

Length

347 amino acids

Sequence
(BLAST)

001: MEEISGGGDT TKNSMASLGI LCEKDIEEQR LQIDSFIASP FQRSMESVLD RAKATAQSQV ELANVKADLR QAEDELVKVL AVKTRKEAKQ MGLRDSISAT
101: QSRIQLLKRS LQLHKSNKEE QSKTISHRLQ GLSVSKDNAG SKLTGNKSNI DDAISWYNHA LGFHVEAGHG VKFTFTNIDA KRPTREFSFT VHYGNDIYTL
201: LDCNPQLDDM DEMVQELNTT NDLFGFVRLM RDKFQKATLS ELPAHSENLP QETSIIYASA PAMSITTDTS MLTPENKVSK VQVNRRQKRS SNSPLQSPAP
301: TSSTRCSSRL KIGSSSYQRA SSSTFHHALA SPLRRLIAKD SFFQEGT

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.