Factsheet for PGSC0003DMT400046630

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112550.2.1	Tomato	nucleus	91.48	88.29
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	65.9	63.81
VIT_17s0000g08910.t01	Wine grape	cytosol	58.36	55.97
KRH57107	Soybean	cytosol	49.84	49.84
KRH63590	Soybean	cytosol	43.93	43.09
KRH03250	Soybean	cytosol	36.07	42.8
AT3G48210.1	Thale cress	cytosol	42.62	41.27
CDY53953	Canola	cytosol	40.0	38.36
Zm00001d011781_P001	Maize	plastid	26.23	34.19
CDY21814	Canola	nucleus	38.69	34.01
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	35.41	33.96
Bra019533.1-P	Field mustard	nucleus	38.36	33.91
GSMUA_Achr10P...	Banana	nucleus	39.67	33.89
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	35.08	33.23
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	34.43	32.61
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	33.77	31.99
TraesCS1D01G031600.1	Wheat	nucleus	32.46	31.43
KRH54356	Soybean	cytosol	24.92	31.28
OQU88270	Sorghum	cytosol, nucleus, plastid	30.16	31.08
Os05t0110700-01	Rice	nucleus	35.74	30.19
Zm00001d041956_P002	Maize	nucleus	30.16	29.49
TraesCS1B01G037800.1	Wheat	nucleus	31.48	29.09
Os01t0973200-00	Rice	cytosol	32.46	28.7
CDY48156	Canola	cytosol	23.28	28.4
EES18884	Sorghum	plastid	28.2	27.39
Zm00001d011068_P001	Maize	plastid	29.51	26.95
Bra018074.1-P	Field mustard	cytosol, plastid	12.13	22.56
HORVU1Hr1G004480.4	Barley	mitochondrion	30.16	21.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400046630	EnsemblPlantsGene:PGSC0003DMG400018106	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PFAM:PF08234
PGSC:PGSC0003DMG400018106	SEG:seg	UniParc:UPI00029567E1	UniProt:M1BJD4	MapMan:13.3.3.2.2.3	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018106]

Coordinates

chr3:-:52338388..52345179

Molecular Weight (calculated)

34803.1 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.745

Length

305 amino acids

Sequence
(BLAST)

001: MEELRLVCDR EIPIQQQRID AATRSFKKSL DSTKAQAQET LQLQSKLGKL KVELRELEDK LVKALAAKTR KEAKQIAVAD SISATKDKVE ELRGVVENQR
101: ARKDEYAAII SQQADELKAC EEKHNQTAEQ REEIEEAIAW YNKVLGLRIE CGHGVKFIFT NIDANNQDKE YFFTVRHEND VYTLIECDPQ LNDAKELLRE
201: LNTSNGLFKF VRTMREKFQA AVIHGTFPDI ASRDQDTFMI SVSAPVSSMS TDSRSEFLSQ QQEHQSDEHN RNSKKLDRAK GSRAALLSPG SASSLRRSPR
301: FKVKR

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.