Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53953 | Canola | cytosol | 73.02 | 72.33 |
| CDY21814 | Canola | nucleus | 72.38 | 65.71 |
| Bra019533.1-P | Field mustard | nucleus | 71.75 | 65.51 |
| CDY48156 | Canola | cytosol | 39.68 | 50.0 |
| VIT_17s0000g08910.t01 | Wine grape | cytosol | 45.08 | 44.65 |
| PGSC0003DMT400046630 | Potato | nucleus | 41.27 | 42.62 |
| Solyc03g112550.2.1 | Tomato | nucleus | 41.59 | 41.46 |
| Bra018074.1-P | Field mustard | cytosol, plastid | 20.95 | 40.24 |
| KRH57107 | Soybean | cytosol | 38.73 | 40.0 |
| Solyc06g071600.2.1 | Tomato | cytosol | 39.05 | 39.17 |
| PGSC0003DMT400069649 | Potato | cytosol, mitochondrion, nucleus, plastid | 38.1 | 38.1 |
| KRH63590 | Soybean | cytosol | 37.46 | 37.94 |
| KRH03250 | Soybean | cytosol | 30.16 | 36.97 |
| KRH54356 | Soybean | cytosol | 23.17 | 30.04 |
| TraesCS3D01G535200.1 | Wheat | mitochondrion, nucleus, plastid | 29.21 | 28.57 |
| TraesCS3B01G599500.1 | Wheat | cytosol, mitochondrion, nucleus | 28.25 | 27.99 |
| TraesCS3A01G529800.1 | Wheat | mitochondrion, nucleus, plastid | 28.57 | 27.95 |
| Zm00001d011781_P001 | Maize | plastid | 20.63 | 27.78 |
| HORVU3Hr1G115810.9 | Barley | cytosol, mitochondrion, plastid | 27.94 | 27.33 |
| TraesCS1D01G031600.1 | Wheat | nucleus | 27.3 | 27.3 |
| GSMUA_Achr10P... | Banana | nucleus | 29.84 | 26.33 |
| Os05t0110700-01 | Rice | nucleus | 28.89 | 25.21 |
| TraesCS1B01G037800.1 | Wheat | nucleus | 25.71 | 24.55 |
| OQU88270 | Sorghum | cytosol, nucleus, plastid | 22.54 | 23.99 |
| Zm00001d011068_P001 | Maize | plastid | 24.44 | 23.05 |
| Os01t0973200-00 | Rice | cytosol | 24.44 | 22.32 |
| Zm00001d041956_P002 | Maize | nucleus | 21.9 | 22.12 |
| EES18884 | Sorghum | plastid | 20.32 | 20.38 |
| HORVU1Hr1G004480.4 | Barley | mitochondrion | 26.03 | 18.98 |
Protein Annotations
| MapMan:13.3.3.2.2.3 | Gene3D:3.30.457.50 | EntrezGene:823978 | ProteinID:AEE78385.1 | EMBL:AF370157 | ArrayExpress:AT3G48210 |
| EnsemblPlantsGene:AT3G48210 | RefSeq:AT3G48210 | TAIR:AT3G48210 | RefSeq:AT3G48210-TAIR-G | EnsemblPlants:AT3G48210.1 | TAIR:AT3G48210.1 |
| EMBL:AY059099 | EMBL:AY087754 | Unigene:At.22211 | ProteinID:CAB51068.1 | ncoils:Coil | GO:GO:0000775 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005694 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0051301 | RefSeq:NP_566900.1 | PFAM:PF08234 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR14281 | UniProt:Q93VK9 | InterPro:Spc25 | UniParc:UPI00000A976D |
| SEG:seg | : | : | : | : | : |
Description
SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
Coordinates
chr3:+:17849351..17851785
Molecular Weight (calculated)
35580.3 Da
IEP (calculated)
10.097
GRAVY (calculated)
-0.628
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.