Factsheet for Os05t0110700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	mitochondrion

nucleus: 18203134

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G031600.1	Wheat	nucleus	48.2	55.24
TraesCS1B01G037800.1	Wheat	nucleus	46.26	50.61
Os01t0973200-00	Rice	cytosol	44.32	46.38
Zm00001d011068_P001	Maize	plastid	37.4	40.42
GSMUA_Achr10P...	Banana	nucleus	35.73	36.13
PGSC0003DMT400046630	Potato	nucleus	30.19	35.74
EES18884	Sorghum	plastid	31.02	35.67
HORVU1Hr1G004480.4	Barley	mitochondrion	42.11	35.19
VIT_17s0000g08910.t01	Wine grape	cytosol	30.19	34.28
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	29.36	33.65
Solyc03g112550.2.1	Tomato	nucleus	29.36	33.54
Solyc06g071600.2.1	Tomato	cytosol	28.53	32.8
KRH57107	Soybean	cytosol	27.42	32.46
KRH63590	Soybean	cytosol	26.87	31.19
AT3G48210.1	Thale cress	cytosol	25.21	28.89
KRH03250	Soybean	cytosol	20.5	28.79
CDY53953	Canola	cytosol	24.65	27.99
KRH54356	Soybean	cytosol	17.73	26.34
CDY48156	Canola	cytosol	17.73	25.6
CDY21814	Canola	nucleus	24.38	25.36
Bra019533.1-P	Field mustard	nucleus	23.82	24.93
Bra018074.1-P	Field mustard	cytosol, plastid	8.86	19.51

Protein Annotations

EnsemblPlants:Os05t0110700-01	EnsemblPlantsGene:Os05g0110700	Gene3D:3.30.457.50	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:BAS91917.1
SEG:seg	UniParc:UPI0000E12300	UniProt:A0A0P0WH03	MapMan:13.3.3.2.2.3	:	:

Description

Chromosome segregation protein Spc25 domain containing protein. (Os05t0110700-01)

Coordinates

chr5:-:568790..572502

Molecular Weight (calculated)

39208.8 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.402

Length

361 amino acids

Sequence
(BLAST)

001: VRTPHFNPHS GHRRLPPIPP PPTPDAASAQ GVGSMEAGGT AAGTRGGGGG AELCRQMAAQ LAAYQRGMAV ERERQASTSA NYRAALLSSR SIARQTISRQ
101: EELSGLNLQL RNLEDGLAEA LSVKAGKESK YQLTKETISS TAAINEKLEG MVTDQRNKRD HHAAVISNHL EAVEALEAKF IEDETRMKKI EEAVIWYSKF
201: LGFQVVGGEG VKFIFNKIDL QSPDKEYSVT LKLAKDRYNL LQCDPSIKDS EELMKDLNLT NDLFKFVRIV RERFQAEAAT VNGGLLMSSV VCPDASSIPV
301: SPPMLMPLDS RTENVLDKSL SQSKNKGRNL PSKRGAAALS AASPGSAVSI VRRSPHFVGI R

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.