Factsheet for Zm00001d011068_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18884	Sorghum	plastid	51.8	55.1
TraesCS1D01G031600.1	Wheat	nucleus	37.72	40.0
Os05t0110700-01	Rice	nucleus	40.42	37.4
TraesCS1B01G037800.1	Wheat	nucleus	35.63	36.06
Zm00001d041956_P002	Maize	nucleus	32.34	34.62
Zm00001d011781_P001	Maize	plastid	23.65	33.76
PGSC0003DMT400046630	Potato	nucleus	26.95	29.51
GSMUA_Achr10P...	Banana	nucleus	30.84	28.85
Solyc03g112550.2.1	Tomato	nucleus	26.95	28.48
Solyc06g071600.2.1	Tomato	cytosol	26.35	28.03
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	25.75	27.3
VIT_17s0000g08910.t01	Wine grape	cytosol	24.25	25.47
HORVU1Hr1G004480.4	Barley	mitochondrion	32.93	25.46
KRH57107	Soybean	cytosol	23.05	25.25
KRH63590	Soybean	cytosol	23.05	24.76
AT3G48210.1	Thale cress	cytosol	23.05	24.44
KRH03250	Soybean	cytosol	17.96	23.35
CDY53953	Canola	cytosol	21.56	22.64
CDY48156	Canola	cytosol	16.17	21.6
Bra019533.1-P	Field mustard	nucleus	22.16	21.45
CDY21814	Canola	nucleus	21.86	21.04
KRH54356	Soybean	cytosol	14.07	19.34
Bra018074.1-P	Field mustard	cytosol, plastid	9.28	18.9

Protein Annotations

EnsemblPlants:Zm00001d011068_P001	EnsemblPlants:Zm00001d011068_T001	EnsemblPlantsGene:Zm00001d011068	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil
PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:AQK95526.1	SEG:seg	UniParc:UPI0008442843
UniProt:A0A1D6FVQ8	MapMan:13.3.3.2.2.3	:	:	:	:

Description

No Description!

Coordinates

chr8:+:138006339..138008714

Molecular Weight (calculated)

37109.1 Da

IEP (calculated)

10.306

GRAVY (calculated)

-0.505

Length

334 amino acids

Sequence
(BLAST)

001: MSSSSDLEQQ VATALRRVTP VAAAPAVDRG GAPDLAAAIQ RRMASQRARG ADAFYAKFAS ARSLADQTFS RRRVQLKGLK DQLRDLQSQL RESLTLQSCK
101: EWKYRIATEP MSEATATNER LRSWVADFRD KRNKGAAIVF EQLQAVESLE ANSNEDAEMA EKVPKAVLWY NKFLGFRVIG GERGVKFVFD KIDPQRPEKE
201: YSFRVSPRSQ FIDSDPHVKD IDELAKDLDL NEHLFEFVRM AREKFQSPFM NETLPVSPDA SAAPLPSPMV VSVNSRSGEA HSQTQSLSKN SARLLPAKRG
301: ATALPGASPG VLRRSPRLEA SRLSMSRCVP VLGQ

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.