CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21814	Canola	nucleus	87.74	80.4
AT3G48210.1	Thale cress	cytosol	72.33	73.02
CDY48156	Canola	cytosol	42.14	53.6
VIT_17s0000g08910.t01	Wine grape	cytosol	41.82	41.82
KRH63590	Soybean	cytosol	40.88	41.8
PGSC0003DMT400046630	Potato	nucleus	38.36	40.0
KRH57107	Soybean	cytosol	37.42	39.02
Solyc03g112550.2.1	Tomato	nucleus	38.36	38.61
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	36.79	37.14
Solyc06g071600.2.1	Tomato	cytosol	36.48	36.94
KRH03250	Soybean	cytosol	28.93	35.8
KRH54356	Soybean	cytosol	25.47	33.33
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	29.25	28.88
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	28.3	28.3
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	28.62	28.26
Zm00001d011781_P001	Maize	plastid	20.75	28.21
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	27.67	27.33
GSMUA_Achr10P...	Banana	nucleus	30.19	26.89
TraesCS1D01G031600.1	Wheat	nucleus	25.79	26.03
Os05t0110700-01	Rice	nucleus	27.99	24.65
TraesCS1B01G037800.1	Wheat	nucleus	25.47	24.55
Os01t0973200-00	Rice	cytosol	26.1	24.06
OQU88270	Sorghum	cytosol, nucleus, plastid	22.01	23.65
Zm00001d041956_P002	Maize	nucleus	22.33	22.76
Zm00001d011068_P001	Maize	plastid	22.64	21.56
EES18884	Sorghum	plastid	18.55	18.79
HORVU1Hr1G004480.4	Barley	mitochondrion	24.84	18.29

Protein Annotations

EnsemblPlants:CDY53953	EnsemblPlantsGene:GSBRNA2T00011799001	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	ProteinID:CDY53953	ProteinID:CDY53953.1	SEG:seg	UniParc:UPI0004EE32AD	UniProt:A0A078IY66
MapMan:13.3.3.2.2.3	:	:	:	:	:

Description

BnaC03g75240DBnaC03g75240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IY66]

Coordinates

chrLK033255:-:58631..60187

Molecular Weight (calculated)

35411.9 Da

IEP (calculated)

9.135

GRAVY (calculated)

-0.608

Length

318 amino acids

Sequence
(BLAST)

001: MEEISGGGDT TKNTMASLGI LCEKDIEEQR LQIDSFIASP FQRSMDSVLA RAKATAQSQV ELANVKADLR EAEDELVNVL AVKTRKEAKQ MGLRDSISAT
101: QSRIQVVKRT LQLHKSNKEE HSKTISHRLQ GLSVSKDNAG KVTGNKSKID EAISWYNQAL GFHVEAGHGV KFTFTNIDAK RPTREFSFTV HYGNDIYTLL
201: DCNPHLDDMD EMVQELNKTN DLFGFVRLMR DKFQKATLSE LPAHSENLPQ ETSIISASAP AMSITTDTSM LTPENKVSKV QVNRRQKRSS NSPLQSPAPT
301: SSTRRSSRLK VPDTRLCS

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.