CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011781_P001	Maize	plastid	55.07	69.66
Zm00001d041956_P002	Maize	nucleus	71.96	68.27
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	51.69	47.52
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	50.34	46.27
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	49.32	45.91
Os01t0973200-00	Rice	cytosol	52.36	44.93
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	47.3	43.48
PGSC0003DMT400046630	Potato	nucleus	31.08	30.16
EES18884	Sorghum	plastid	31.76	29.94
Solyc03g112550.2.1	Tomato	nucleus	31.42	29.43
GSMUA_Achr10P...	Banana	nucleus	35.47	29.41
VIT_17s0000g08910.t01	Wine grape	cytosol	30.07	27.99
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	29.05	27.3
Solyc06g071600.2.1	Tomato	cytosol	28.38	26.75
KRH57107	Soybean	cytosol	24.32	23.61
KRH63590	Soybean	cytosol	24.32	23.15
CDY48156	Canola	cytosol	19.26	22.8
AT3G48210.1	Thale cress	cytosol	23.99	22.54
CDY53953	Canola	cytosol	23.65	22.01
CDY21814	Canola	nucleus	25.0	21.33
Bra019533.1-P	Field mustard	nucleus	24.66	21.16
KRH54356	Soybean	cytosol	17.23	20.99
KRH03250	Soybean	cytosol	17.91	20.62
Bra018074.1-P	Field mustard	cytosol, plastid	9.8	17.68

Protein Annotations

EnsemblPlants:OQU88270	EnsemblPlantsGene:SORBI_3003G444300	EntrezGene:8078058	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil
PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:OQU88270	ProteinID:OQU88270.1	ProteinID:OQU88271.1
UniParc:UPI0009DC867E	UniProt:A0A1W0W1L1	MapMan:13.3.3.2.2.3	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:74260094..74264276

Molecular Weight (calculated)

33091.1 Da

IEP (calculated)

8.729

GRAVY (calculated)

-0.483

Length

296 amino acids

Sequence
(BLAST)

001: MADAAADLRR RIKEQRAAIK RRITDSRDRT AAASSTFNAA LLEARSIANQ TVSNRAKLSQ QKQHLRKLES DLAQALSVQT SRMSNHKLMT ESISNTIATN
101: EQLRRLVMDR RATRDACMNA ISNQLKDIES LEAESDADGD KNLENSLMWY DKFLGFQVVG GEGVKFVFNK IDVQSPDKEY SFCVKLVEER YVLVRCVPFV
201: DGIEELVKEL NCNNDLYKFV RFMRNRFQAA TISGNQLSSS FCPEVLSITS SSPALSVDSR SENGIDRSHT QGTLLKLAPN GWPRNIANSS AAGQTE

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.