Factsheet for PGSC0003DMT400069649

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071600.2.1	Tomato	cytosol	89.21	89.49
PGSC0003DMT400046630	Potato	nucleus	63.81	65.9
VIT_17s0000g08910.t01	Wine grape	cytosol	53.02	52.52
KRH57107	Soybean	cytosol	42.54	43.93
KRH63590	Soybean	cytosol	41.27	41.8
KRH03250	Soybean	cytosol	31.75	38.91
AT3G48210.1	Thale cress	cytosol	38.1	38.1
CDY53953	Canola	cytosol	37.14	36.79
GSMUA_Achr10P...	Banana	nucleus	39.37	34.73
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	34.92	34.59
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	34.92	34.16
CDY21814	Canola	nucleus	34.92	31.7
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	32.38	31.68
Bra019533.1-P	Field mustard	nucleus	34.6	31.59
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	32.06	31.37
Zm00001d011781_P001	Maize	plastid	23.17	31.2
KRH54356	Soybean	cytosol	23.17	30.04
Os01t0973200-00	Rice	cytosol	32.7	29.86
Os05t0110700-01	Rice	nucleus	33.65	29.36
Zm00001d041956_P002	Maize	nucleus	28.89	29.17
OQU88270	Sorghum	cytosol, nucleus, plastid	27.3	29.05
TraesCS1D01G031600.1	Wheat	nucleus	28.89	28.89
CDY48156	Canola	cytosol	22.86	28.8
Zm00001d011068_P001	Maize	plastid	27.3	25.75
TraesCS1B01G037800.1	Wheat	nucleus	26.35	25.15
EES18884	Sorghum	plastid	24.44	24.52
HORVU1Hr1G004480.4	Barley	mitochondrion	26.98	19.68
Bra018074.1-P	Field mustard	cytosol, plastid	10.16	19.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400069649	EnsemblPlantsGene:PGSC0003DMG400027080	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	PGSC:PGSC0003DMG400027080	SEG:seg	UniParc:UPI00029691CB	UniProt:M1CKU9	MapMan:13.3.3.2.2.3

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027080]

Coordinates

chr6:+:52448711..52451758

Molecular Weight (calculated)

35598.5 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.645

Length

315 amino acids

Sequence
(BLAST)

001: MQNGAAATLR AKMEQLRLKC NRDLQIRQQS IDAGAISFRK SLDSTKTQAQ QTLQFQEKLG KLKTELREAE DNLVKALAVK TRKEAKRIEI AKLISSTNAR
101: VEELRGVVED KRARKHEYSA LICQQDDVLE ALEEKLNQNT GHREAIEEAT VWYNKVLGLR IECGQGVKFI FTNINANNPD DEYSFTIRRE NDAHTLIDCD
201: PQLNDAKELI IELNKSNGMF KFVRTMREKF LEAVARGLTS QDQDNSMVSM PAVMSSISIG SRDESSPQKV EPQSDEYKKG ASRKLALGKR DRSAILSPVS
301: ASSLRRSPRF KVSFC

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.