CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018074.1-P	Field mustard	cytosol, plastid	36.4	55.49
CDY53953	Canola	cytosol	53.6	42.14
AT3G48210.1	Thale cress	cytosol	50.0	39.68
CDY21814	Canola	nucleus	51.6	37.18
VIT_17s0000g08910.t01	Wine grape	cytosol	32.0	25.16
KRH63590	Soybean	cytosol	30.4	24.44
KRH57107	Soybean	cytosol	29.2	23.93
Solyc03g112550.2.1	Tomato	nucleus	30.0	23.73
PGSC0003DMT400046630	Potato	nucleus	28.4	23.28
Solyc06g071600.2.1	Tomato	cytosol	29.2	23.25
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	28.8	22.86
Zm00001d011781_P001	Maize	plastid	20.4	21.79
KRH54356	Soybean	cytosol	20.0	20.58
KRH03250	Soybean	cytosol	20.8	20.23
Zm00001d041956_P002	Maize	nucleus	24.4	19.55
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	24.8	19.5
OQU88270	Sorghum	cytosol, nucleus, plastid	22.8	19.26
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	24.8	19.25
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	24.4	18.94
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	24.4	18.94
Os05t0110700-01	Rice	nucleus	25.6	17.73
GSMUA_Achr10P...	Banana	nucleus	25.2	17.65
TraesCS1D01G031600.1	Wheat	nucleus	22.0	17.46
Os01t0973200-00	Rice	cytosol	24.0	17.39
TraesCS1B01G037800.1	Wheat	nucleus	22.0	16.67
Zm00001d011068_P001	Maize	plastid	21.6	16.17
HORVU1Hr1G004480.4	Barley	mitochondrion	22.4	12.96
EES18884	Sorghum	plastid	16.0	12.74

Protein Annotations

EnsemblPlants:CDY48156	EnsemblPlantsGene:GSBRNA2T00088968001	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	ProteinID:CDY48156	ProteinID:CDY48156.1	UniParc:UPI0004EE1B0F	UniProt:A0A078IDV0	MapMan:13.3.3.2.2.3

Description

BnaA06g16770DBnaA06g16770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDV0]

Coordinates

chrLK032757:+:72979..74381

Molecular Weight (calculated)

28607.0 Da

IEP (calculated)

8.964

GRAVY (calculated)

-0.451

Length

250 amino acids

Sequence
(BLAST)

001: MEQLNYIRGG DTTKKTMVSL GLMREKDIDE HRLKIDSCVA SPFQRSVDSV LDRAKATAQS QVELATMKSN LREAEDELVK LGQLQANTRL YKVVIFINIP
101: SLFHSNFSLK DQANIFLLRS SNKDFAVSKD SAGNVTQDNI KDAISWYKQA LGFNVEAGHG VKFTFTNIDA KRPTREFSFT VHYGNDIYSC EYTHFLLKPS
201: IDYILLFTKS LYKTNDHFGF VRQMRDKFQK ATLSELPTHS ENLPQEISNR

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.