Factsheet for Bra018074.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
golgi 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48156	Canola	cytosol	55.49	36.4
AT3G48210.1	Thale cress	cytosol	40.24	20.95
Bra019533.1-P	Field mustard	nucleus	39.02	18.55
KRH03250	Soybean	cytosol	20.12	12.84
Solyc03g112550.2.1	Tomato	nucleus	23.78	12.34
PGSC0003DMT400046630	Potato	nucleus	22.56	12.13
KRH57107	Soybean	cytosol	22.56	12.13
Zm00001d011781_P001	Maize	plastid	17.07	11.97
VIT_17s0000g08910.t01	Wine grape	cytosol	22.56	11.64
KRH54356	Soybean	cytosol	16.46	11.11
Solyc06g071600.2.1	Tomato	cytosol	20.12	10.51
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	20.12	10.25
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	20.12	10.25
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	19.51	10.16
KRH63590	Soybean	cytosol	18.9	9.97
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	19.51	9.94
OQU88270	Sorghum	cytosol, nucleus, plastid	17.68	9.8
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	18.9	9.75
Zm00001d011068_P001	Maize	plastid	18.9	9.28
Os01t0973200-00	Rice	cytosol	19.51	9.28
GSMUA_Achr10P...	Banana	nucleus	20.12	9.24
TraesCS1D01G031600.1	Wheat	nucleus	17.68	9.21
TraesCS1B01G037800.1	Wheat	nucleus	18.29	9.09
Os05t0110700-01	Rice	nucleus	19.51	8.86
Zm00001d041956_P002	Maize	nucleus	16.46	8.65
EES18884	Sorghum	plastid	15.85	8.28
HORVU1Hr1G004480.4	Barley	mitochondrion	18.9	7.18

Protein Annotations

EnsemblPlants:Bra018074.1	EnsemblPlants:Bra018074.1-P	EnsemblPlantsGene:Bra018074	Gene3D:3.30.457.50	InterPro:Spc25	PANTHER:PTHR14281
PFAM:PF08234	SEG:seg	UniParc:UPI000253F31D	UniProt:M4DNI7	MapMan:13.3.3.2.2.3	:

Description

AT3G48210 (E=2e-025) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 142 Blast hits to 142 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

Coordinates

chrA06:-:10016807..10018356

Molecular Weight (calculated)

18289.8 Da

IEP (calculated)

9.923

GRAVY (calculated)

-0.413

Length

164 amino acids

Sequence
(BLAST)

001: MEQLNYIRGG DTTKKTMVSL GPGPAYKGGQ AVRPPRVRVR VLLWPLTVLS RPCLGLMREK DIAEHRLKID SCVASPFQRS VDSVLDRAKA TAQSQYFAVS
101: KDSAGNVTQD NIKDAISWYK QALGFNVEAG HGVKFTFTNI DAKRPTREFS FTVHYGNDIY SYEG

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.