Factsheet for Zm00001d011781_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88270	Sorghum	cytosol, nucleus, plastid	69.66	55.07
Zm00001d041956_P002	Maize	nucleus	69.23	51.92
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	50.0	36.34
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	49.15	35.71
Os01t0973200-00	Rice	cytosol	52.56	35.65
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	48.29	35.53
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	46.58	33.85
PGSC0003DMT400046630	Potato	nucleus	34.19	26.23
Solyc03g112550.2.1	Tomato	nucleus	33.33	24.68
GSMUA_Achr10P...	Banana	nucleus	36.75	24.09
Zm00001d011068_P001	Maize	plastid	33.76	23.65
Solyc06g071600.2.1	Tomato	cytosol	31.2	23.25
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	31.2	23.17
VIT_17s0000g08910.t01	Wine grape	cytosol	31.2	22.96
KRH63590	Soybean	cytosol	29.91	22.51
KRH54356	Soybean	cytosol	23.08	22.22
KRH57107	Soybean	cytosol	28.21	21.64
CDY53953	Canola	cytosol	28.21	20.75
AT3G48210.1	Thale cress	cytosol	27.78	20.63
CDY48156	Canola	cytosol	21.79	20.4
CDY21814	Canola	nucleus	29.06	19.6
Bra019533.1-P	Field mustard	nucleus	28.63	19.42
KRH03250	Soybean	cytosol	19.23	17.51
Bra018074.1-P	Field mustard	cytosol, plastid	11.97	17.07

Protein Annotations

EnsemblPlants:Zm00001d011781_P001	EnsemblPlants:Zm00001d011781_T001	EnsemblPlantsGene:Zm00001d011781	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil
PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:AQK98011.1	SEG:seg	UniParc:UPI000222123C
UniProt:K7V1C2	MapMan:13.3.3.2.2.3	:	:	:	:

Description

No Description!

Coordinates

chr8:+:161472200..161475123

Molecular Weight (calculated)

26104.0 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.397

Length

234 amino acids

Sequence
(BLAST)

001: MPAKLSEQKQ HLRKLESDLA QALSVQTSRR SKHNLMTESI LKTTATNEQL THLVTGRRAT RDECMNAISI QLKDIESLES ESDTNEDKNL EKALIWYNKF
101: LGFQVVGGEG VKFMFNKIDV QSPDKECYFC VKLVEGRYTL VQCVPSVDGA EELVKDLNCN NDLYKFVRVV RDRLQAAIIS GNMLSSSFCA DLSSITSSSF
201: SASSLDSTSE NNINRSQSKN QECPVKGLAK SLAM

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.