Factsheet for Solyc03g112550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046630	Potato	nucleus	88.29	91.48
Solyc06g071600.2.1	Tomato	cytosol	60.76	61.15
VIT_17s0000g08910.t01	Wine grape	cytosol	56.96	56.6
KRH57107	Soybean	cytosol	47.15	48.85
KRH03250	Soybean	cytosol	35.76	43.97
KRH63590	Soybean	cytosol	42.41	43.09
AT3G48210.1	Thale cress	cytosol	41.46	41.59
CDY53953	Canola	cytosol	38.61	38.36
GSMUA_Achr10P...	Banana	nucleus	39.56	35.01
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	35.13	34.91
Bra019533.1-P	Field mustard	nucleus	37.34	34.2
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	34.81	34.16
CDY21814	Canola	nucleus	37.34	34.01
Zm00001d011781_P001	Maize	plastid	24.68	33.33
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	33.86	33.23
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	33.23	32.61
KRH54356	Soybean	cytosol	24.68	32.1
OQU88270	Sorghum	cytosol, nucleus, plastid	29.43	31.42
TraesCS1D01G031600.1	Wheat	nucleus	31.01	31.11
Zm00001d041956_P002	Maize	nucleus	30.38	30.77
CDY48156	Canola	cytosol	23.73	30.0
Os05t0110700-01	Rice	nucleus	33.54	29.36
Os01t0973200-00	Rice	cytosol	31.65	28.99
TraesCS1B01G037800.1	Wheat	nucleus	29.43	28.18
Zm00001d011068_P001	Maize	plastid	28.48	26.95
EES18884	Sorghum	plastid	26.27	26.43
Bra018074.1-P	Field mustard	cytosol, plastid	12.34	23.78
HORVU1Hr1G004480.4	Barley	mitochondrion	28.8	21.06

Protein Annotations

EnsemblPlants:Solyc03g112550.2.1	EnsemblPlantsGene:Solyc03g112550.2	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	SEG:seg	UniParc:UPI0002767685	UniProt:K4BKA8	MapMan:13.3.3.2.2.3	:

Description

No Description!

Coordinates

chr3:-:62937155..62943221

Molecular Weight (calculated)

36213.0 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.720

Length

316 amino acids

Sequence
(BLAST)

001: MKISVGEITR NKMEELRLVC DREIPIQQQR IDAATRSFKK CLDSTKTQAQ ETLQLQSKLG KLKVELRELE DKLVKALAAK TRKEAKQIAI ADSISSTKYT
101: VEELRGVVEN QRARKDEYAA IISQQADELK ACEEKHNQTA EQREEIEEAI VWYNKVLGLR IECGHGVKFV FTNIDANNQD KEYFFTIRHE NDVYTLIECD
201: PQLNDAKELL RELNRSNGLF KFVRTMREKF QAAVTHGTFP DMASRDQDTF MISVSAPVSS ISTDSRSEFL SQQEHQSDEH NRNLKKVDRA KGSRAALLSP
301: GSASSLRRSP RFKVKR

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.