CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011068_P001	Maize	plastid	55.1	51.8
TraesCS1D01G031600.1	Wheat	nucleus	32.8	32.7
OQU88270	Sorghum	cytosol, nucleus, plastid	29.94	31.76
Os05t0110700-01	Rice	nucleus	35.67	31.02
TraesCS1B01G037800.1	Wheat	nucleus	32.17	30.61
PGSC0003DMT400046630	Potato	nucleus	27.39	28.2
Solyc03g112550.2.1	Tomato	nucleus	26.43	26.27
Solyc06g071600.2.1	Tomato	cytosol	25.48	25.48
KRH57107	Soybean	cytosol	24.52	25.25
GSMUA_Achr10P...	Banana	nucleus	28.34	24.93
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	24.52	24.44
VIT_17s0000g08910.t01	Wine grape	cytosol	23.89	23.58
KRH63590	Soybean	cytosol	23.25	23.47
HORVU1Hr1G004480.4	Barley	mitochondrion	30.57	22.22
AT3G48210.1	Thale cress	cytosol	20.38	20.32
KRH03250	Soybean	cytosol	16.24	19.84
KRH54356	Soybean	cytosol	14.97	19.34
CDY53953	Canola	cytosol	18.79	18.55
Bra019533.1-P	Field mustard	nucleus	18.47	16.81
CDY21814	Canola	nucleus	18.15	16.43
CDY48156	Canola	cytosol	12.74	16.0
Bra018074.1-P	Field mustard	cytosol, plastid	8.28	15.85

Protein Annotations

EnsemblPlants:EES18884	EnsemblPlantsGene:SORBI_3009G011500	EntrezGene:8067321	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil
PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:EES18884	ProteinID:EES18884.1	RefSeq:XP_002440454.1
SEG:seg	UniParc:UPI0001A88A09	UniProt:C5YYH0	MapMan:13.3.3.2.2.3	:	:

Description

hypothetical protein

Coordinates

chr9:-:1033277..1035844

Molecular Weight (calculated)

35146.5 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.675

Length

314 amino acids

Sequence
(BLAST)

001: MSSSNLEQYL AAALCRHTPA AATATAAPAG AGGGTPDLAA VAIQRQKAAQ RARFTTAAFS AEFAPARSLA DQYFSRREQV KGLEDQLRDI QSQRSEAATL
101: QSRKEPKIER ATEFISEATD RNEQLRSSVA DVREKRNLRA TITSQELQAL QSLEAESNEG AETNDKTLET ILWYEKFLGF RIVVGKDVKF VFNKIPQRRE
201: KEYSFRVSRS LQLIECDPHV KDIEELAKDL DLNEHLFKFA RMAREKFQSS FMNGTLPGTP ETLPVSNRSE DAHNETQSSS KKNVQLLPVK KEDTALLGAS
301: PGVRRRSKRL KGMR

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.