CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03250	Soybean	cytosol	66.89	79.38
KRH63590	Soybean	cytosol	60.66	59.49
PGSC0003DMT400046630	Potato	nucleus	49.84	49.84
VIT_17s0000g08910.t01	Wine grape	cytosol	50.16	48.11
Solyc03g112550.2.1	Tomato	nucleus	48.85	47.15
KRH54356	Soybean	cytosol	35.74	44.86
Solyc06g071600.2.1	Tomato	cytosol	43.93	42.68
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	43.93	42.54
AT3G48210.1	Thale cress	cytosol	40.0	38.73
CDY53953	Canola	cytosol	39.02	37.42
CDY21814	Canola	nucleus	38.69	34.01
Bra019533.1-P	Field mustard	nucleus	38.36	33.91
GSMUA_Achr10P...	Banana	nucleus	36.07	30.81
TraesCS1D01G031600.1	Wheat	nucleus	30.16	29.21
CDY48156	Canola	cytosol	23.93	29.2
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	29.84	28.62
Zm00001d011781_P001	Maize	plastid	21.64	28.21
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	29.51	27.95
Os05t0110700-01	Rice	nucleus	32.46	27.42
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	28.85	27.33
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	28.85	27.33
TraesCS1B01G037800.1	Wheat	nucleus	27.54	25.45
Os01t0973200-00	Rice	cytosol	28.52	25.22
EES18884	Sorghum	plastid	25.25	24.52
OQU88270	Sorghum	cytosol, nucleus, plastid	23.61	24.32
Zm00001d041956_P002	Maize	nucleus	24.59	24.04
Zm00001d011068_P001	Maize	plastid	25.25	23.05
Bra018074.1-P	Field mustard	cytosol, plastid	12.13	22.56
HORVU1Hr1G004480.4	Barley	mitochondrion	26.23	18.52

Protein Annotations

EMBL:ACUP02002812	EnsemblPlants:KRH57107	EnsemblPlantsGene:GLYMA_05G040000	EntrezGene:100776032	Gene3D:3.30.457.50	InterPro:Spc25
ncoils:Coil	PANTHER:PTHR14281	PANTHER:PTHR14281:SF0	PFAM:PF08234	ProteinID:KRH57107	ProteinID:KRH57107.1
SEG:seg	UniParc:UPI00023C4FBC	UniProt:A0A0R0JXR3	MapMan:13.3.3.2.2.3	:	:

Description

hypothetical protein

Coordinates

chr5:+:3561088..3565370

Molecular Weight (calculated)

34596.0 Da

IEP (calculated)

8.776

GRAVY (calculated)

-0.621

Length

305 amino acids

Sequence
(BLAST)

001: MESPISICDT EIPLQMQSID AFTASYVKSL HSLRATAQET ARCQVQLDEV KSKLRETEDD FVKALAVKTR KEAKRMALMD AIASAKARVE DLNASIQEQR
101: TKKQEYAAFI SQQSLALAAS EGKLNESIEQ NDETQAISWY NRVLGFHVKG GRGVKFTFKN INMNNPDEEY FFTIFHENDT YSLLSCEHSL RDTKELIHEL
201: NKTNDLFKFV RIMRKKFQEV VAQGNLVVTK DEHEESAFNS ASAPVLSMSS VRSDFLGKEN EHQAEPIEGN KQFKKQNVHR RLKSSVLSPG SASSVRQSPR
301: LKARK

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.