Factsheet for TraesCS3D01G535200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	91.61	92.77
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	88.82	88.82
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	80.43	80.43
Os01t0973200-00	Rice	cytosol	62.73	58.55
OQU88270	Sorghum	cytosol, nucleus, plastid	46.27	50.34
Zm00001d011781_P001	Maize	plastid	35.71	49.15
Zm00001d041956_P002	Maize	nucleus	45.96	47.44
TraesCS1D01G031600.1	Wheat	nucleus	45.96	46.98
GSMUA_Achr10P...	Banana	nucleus	40.99	36.97
PGSC0003DMT400046630	Potato	nucleus	33.23	35.08
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	34.16	34.92
Solyc03g112550.2.1	Tomato	nucleus	34.16	34.81
Solyc06g071600.2.1	Tomato	cytosol	33.85	34.71
VIT_17s0000g08910.t01	Wine grape	cytosol	31.37	31.76
KRH57107	Soybean	cytosol	27.95	29.51
CDY53953	Canola	cytosol	28.88	29.25
AT3G48210.1	Thale cress	cytosol	28.57	29.21
KRH63590	Soybean	cytosol	25.78	26.69
Bra019533.1-P	Field mustard	nucleus	28.57	26.67
CDY21814	Canola	nucleus	28.26	26.22
KRH54356	Soybean	cytosol	19.57	25.93
CDY48156	Canola	cytosol	18.94	24.4
KRH03250	Soybean	cytosol	18.01	22.57
Bra018074.1-P	Field mustard	cytosol, plastid	9.94	19.51

Protein Annotations

EnsemblPlants:TraesCS3D01G535200.1	EnsemblPlantsGene:TraesCS3D01G535200	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PANTHER:PTHR14281:SF1	PFAM:PF08234	SEG:seg	MapMan:13.3.3.2.2.3	:	:

Description

No Description!

Coordinates

chr3D:-:609607381..609610100

Molecular Weight (calculated)

35147.5 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.529

Length

322 amino acids

Sequence
(BLAST)

001: MEGDRAGGPA AADLRRDMAA ARAACERRIA QGRERTAAAA SAFRGAILSA RSLAEHSVAH REKLNSLKDQ LRGLEAGLAE ALSTQLKKES ECKLTSESIS
101: NATATNEQLR GLLLDQRARR DEFANVISHQ LQAIEALEAN VDVMGKKNLD EAIMWYNKFL GFRVVAGEGV KFVFNKVDMQ SPDDEYSFCI KVNKDEYNLI
201: QCIPLLKDTE ELVKDLNRTN DLFKFVRTMR ARFQSAGIKG VHPATSLCTD TSSTPISSPP AVSVDTTSEG STNQSHSRSR SKNQVPRAKR GAPPRSTASP
301: LTSGSVTRRS PRFAAADAGN RH

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.