Factsheet for TraesCS3B01G599500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	92.77	91.61
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	85.85	84.78
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	79.87	78.88
Os01t0973200-00	Rice	cytosol	62.89	57.97
OQU88270	Sorghum	cytosol, nucleus, plastid	45.91	49.32
Zm00001d011781_P001	Maize	plastid	35.53	48.29
Zm00001d041956_P002	Maize	nucleus	45.6	46.47
TraesCS1B01G037800.1	Wheat	nucleus	46.23	44.55
PGSC0003DMT400046630	Potato	nucleus	33.96	35.41
GSMUA_Achr10P...	Banana	nucleus	39.62	35.29
Solyc03g112550.2.1	Tomato	nucleus	34.91	35.13
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	34.59	34.92
Solyc06g071600.2.1	Tomato	cytosol	33.65	34.08
VIT_17s0000g08910.t01	Wine grape	cytosol	31.76	31.76
KRH57107	Soybean	cytosol	28.62	29.84
CDY53953	Canola	cytosol	28.3	28.3
AT3G48210.1	Thale cress	cytosol	27.99	28.25
KRH63590	Soybean	cytosol	26.1	26.69
Bra019533.1-P	Field mustard	nucleus	28.3	26.09
CDY21814	Canola	nucleus	27.99	25.65
KRH54356	Soybean	cytosol	19.5	25.51
CDY48156	Canola	cytosol	19.5	24.8
KRH03250	Soybean	cytosol	17.92	22.18
Bra018074.1-P	Field mustard	cytosol, plastid	9.75	18.9

Protein Annotations

EnsemblPlants:TraesCS3B01G599500.1	EnsemblPlantsGene:TraesCS3B01G599500	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PANTHER:PTHR14281:SF1	PFAM:PF08234	SEG:seg	MapMan:13.3.3.2.2.3	:	:

Description

No Description!

Coordinates

chr3B:-:820463589..820466242

Molecular Weight (calculated)

34593.4 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.608

Length

318 amino acids

Sequence
(BLAST)

001: MEGDRAGGPA AADLRRDMAA CERRIAQGRD RTAAAASAFR GAVLSARSLA EHSVAHREKL NALKDQLRGL EAALAEALST QLKKESECKH TSESISNATA
101: TNEQLRGLVS EQRARRDEYA NVIAHQLEAV EALEANVDAT GKKNLDEAIT WYDKFLGFRV VAGEGVKFVF NKVDMQSPDD EYSFCIKVNK DEYSLIQCIP
201: LLKDTEELVK DLNRTNDLFK FVRTMRARFQ AAGIKGVHPA TSLCQDTSST PISSPPAVSV DTTSEGSTNQ SHSRSRSKNQ DTRAKRGAPP RSTASPLTSG
301: SATRRSPRFA AADAGNKH

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.