Factsheet for Zm00001d041956_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88270	Sorghum	cytosol, nucleus, plastid	68.27	71.96
Zm00001d011781_P001	Maize	plastid	51.92	69.23
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	47.76	46.27
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	47.44	45.96
Os01t0973200-00	Rice	cytosol	50.64	45.8
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	46.47	45.6
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	43.59	42.24
Zm00001d011068_P001	Maize	plastid	34.62	32.34
Solyc03g112550.2.1	Tomato	nucleus	30.77	30.38
GSMUA_Achr10P...	Banana	nucleus	34.62	30.25
PGSC0003DMT400046630	Potato	nucleus	29.49	30.16
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	29.17	28.89
VIT_17s0000g08910.t01	Wine grape	cytosol	28.53	27.99
Solyc06g071600.2.1	Tomato	cytosol	27.88	27.71
KRH57107	Soybean	cytosol	24.04	24.59
CDY48156	Canola	cytosol	19.55	24.4
KRH63590	Soybean	cytosol	23.4	23.47
CDY53953	Canola	cytosol	22.76	22.33
AT3G48210.1	Thale cress	cytosol	22.12	21.9
Bra019533.1-P	Field mustard	nucleus	23.4	21.16
KRH54356	Soybean	cytosol	16.35	20.99
CDY21814	Canola	nucleus	23.08	20.75
KRH03250	Soybean	cytosol	16.67	20.23
Bra018074.1-P	Field mustard	cytosol, plastid	8.65	16.46

Protein Annotations

EnsemblPlants:Zm00001d041956_P002	EnsemblPlants:Zm00001d041956_T002	EnsemblPlantsGene:Zm00001d041956	EntrezGene:100216610	Gene3D:3.30.457.50	InterPro:Spc25
ncoils:Coil	PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234	ProteinID:ONM34201.1	SEG:seg
UniParc:UPI000844EED1	UniProt:A0A1D6N088	MapMan:13.3.3.2.2.3	:	:	:

Description

No Description!

Coordinates

chr3:+:145600551..145603370

Molecular Weight (calculated)

34487.8 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.348

Length

312 amino acids

Sequence
(BLAST)

001: MSTAVHAAAM AEDAAADLRR RMKDKRAAIE RRITDSRDRA AAASSAFSAA LLEARSIANQ TVSNRGISNS WPPTSTTRLF FPPSALASPS SPIFGLVSIM
101: DQPAKLSEQK QHLRKLESDL AQALSVQASR RSKHKFMTES ISNTTATNEH LRHLAMDRRS TRDECMNAIS NQLKDIESLE AESDAHGDKS LETALMWYDK
201: FLGFQVVGGE GVKFVFNKID VQNPDKKYSF CIKLAGERYI LVWCVPSVDD AEELVKDLNC SNDLYKFVRA MREMFQAATI SGNLLPSSFC PDVSSITSSS
301: FSALSLDSRS EK

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.