Factsheet for Solyc06g071600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	89.49	89.21
Solyc03g112550.2.1	Tomato	nucleus	61.15	60.76
VIT_17s0000g08910.t01	Wine grape	cytosol	51.27	50.63
KRH57107	Soybean	cytosol	42.68	43.93
KRH63590	Soybean	cytosol	40.45	40.84
AT3G48210.1	Thale cress	cytosol	39.17	39.05
KRH03250	Soybean	cytosol	31.53	38.52
CDY53953	Canola	cytosol	36.94	36.48
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	34.71	33.85
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	34.08	33.65
GSMUA_Achr10P...	Banana	nucleus	37.9	33.33
CDY21814	Canola	nucleus	35.03	31.7
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	32.48	31.68
Bra019533.1-P	Field mustard	nucleus	34.71	31.59
Zm00001d011781_P001	Maize	plastid	23.25	31.2
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	31.53	30.75
KRH54356	Soybean	cytosol	23.25	30.04
TraesCS1D01G031600.1	Wheat	nucleus	29.62	29.52
CDY48156	Canola	cytosol	23.25	29.2
Os05t0110700-01	Rice	nucleus	32.8	28.53
OQU88270	Sorghum	cytosol, nucleus, plastid	26.75	28.38
Os01t0973200-00	Rice	cytosol	30.89	28.12
Zm00001d041956_P002	Maize	nucleus	27.71	27.88
Zm00001d011068_P001	Maize	plastid	28.03	26.35
EES18884	Sorghum	plastid	25.48	25.48
TraesCS1B01G037800.1	Wheat	nucleus	26.75	25.45
HORVU1Hr1G004480.4	Barley	mitochondrion	27.71	20.14
Bra018074.1-P	Field mustard	cytosol, plastid	10.51	20.12

Protein Annotations

EnsemblPlants:Solyc06g071600.2.1	EnsemblPlantsGene:Solyc06g071600.2	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PFAM:PF08234	SEG:seg	UniParc:UPI00027672C4	UniProt:K4C8N2	MapMan:13.3.3.2.2.3	:

Description

No Description!

Coordinates

chr6:+:44095321..44098542

Molecular Weight (calculated)

35632.6 Da

IEP (calculated)

9.845

GRAVY (calculated)

-0.655

Length

314 amino acids

Sequence
(BLAST)

001: MQNGAAAVTV REKMEQLRLK CNRDLQIQQQ SIDAGAISFW KSLDSTKTQA RQTLQFQEKL GKLKTELREA EDNLVKALAV KTRKEAKRIK IAELIATTNA
101: RVEELRGVME DKRVRKHEYS ALISQQDDAL EALEENLNQN SGHREAIEEA TGWYNKVLGL RIECGLGVKF IFTNINANNP DDEYSFTVRR ENDAHTLIDC
201: DPQLNDAKEL IIELNKSNGM FKFVRTMRKK FLEAVARGLT SQDQDTSMVS MPTVMSSISI ISRDESSPQK AEPQSDEYKR ASRKLALGKR DRSAILSPVS
301: ALSLRRSPRF KVNK

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.