Factsheet for GSMUA_Achr10P00850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08910.t01	Wine grape	cytosol	36.97	41.51
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	36.97	40.99
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	36.69	40.68
TraesCS1D01G031600.1	Wheat	nucleus	35.57	40.32
PGSC0003DMT400046630	Potato	nucleus	33.89	39.67
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	35.29	39.62
Solyc03g112550.2.1	Tomato	nucleus	35.01	39.56
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	34.73	39.37
Solyc06g071600.2.1	Tomato	cytosol	33.33	37.9
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	33.89	37.58
Zm00001d011781_P001	Maize	plastid	24.09	36.75
TraesCS1B01G037800.1	Wheat	nucleus	33.89	36.67
Os01t0973200-00	Rice	cytosol	35.29	36.52
KRH57107	Soybean	cytosol	30.81	36.07
Os05t0110700-01	Rice	nucleus	36.13	35.73
OQU88270	Sorghum	cytosol, nucleus, plastid	29.41	35.47
Zm00001d041956_P002	Maize	nucleus	30.25	34.62
KRH63590	Soybean	cytosol	29.69	34.08
Zm00001d011068_P001	Maize	plastid	28.85	30.84
CDY53953	Canola	cytosol	26.89	30.19
AT3G48210.1	Thale cress	cytosol	26.33	29.84
KRH54356	Soybean	cytosol	20.17	29.63
KRH03250	Soybean	cytosol	21.29	29.57
EES18884	Sorghum	plastid	24.93	28.34
Bra019533.1-P	Field mustard	nucleus	26.89	27.83
CDY21814	Canola	nucleus	25.77	26.51
HORVU1Hr1G004480.4	Barley	mitochondrion	31.37	25.93
CDY48156	Canola	cytosol	17.65	25.2
Bra018074.1-P	Field mustard	cytosol, plastid	9.24	20.12

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00850_001	EnsemblPlants:GSMUA_Achr10T00850_001	EnsemblPlantsGene:GSMUA_Achr10G00850_001	Gene3D:3.30.457.50	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281	PANTHER:PTHR14281:SF1	PFAM:PF08234
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002957330	UniProt:M0REB2	MapMan:13.3.3.2.2.3	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G00850_001]

Coordinates

chr10:-:1478453..1484720

Molecular Weight (calculated)

40682.8 Da

IEP (calculated)

8.948

GRAVY (calculated)

-0.383

Length

357 amino acids

Sequence
(BLAST)

001: MQRRTEESIH GRMAEQRLAC IREIEIHRQR ADLAASSFRH SLLSVRSLAG HNLADREKLG RLKDSLKELE ADLVEALSVK TGKESKSTFL AEALSSTASR
101: TEQLKKTILD LRRKRDKHSA VISEQLLALE ALEAKSSQYI LERQKTEEAI EWYNRILGFR AECGEGVKFI FDKIDRKNPN EEYSFSIRLD NDAYNLLDCN
201: TILEGIPELI MDLNKTNGLF KFARIMREKF QVAASNGMLP TSMSVYPDSS SVTVSSAPPA SVDSKSETSV MQNYLRVKVN DHQYDPHKKV NTGQPAIQSP
301: RSVSALRRSP RFLNELSLAT CLGYTSSLVM AFCHTFLLFH WQVYLCMIRE QKSIFFF

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.