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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY21814 Canola nucleus 96.52 95.97
AT3G48210.1 Thale cress cytosol 65.51 71.75
KRH63590 Soybean cytosol 36.81 40.84
VIT_17s0000g08910.t01 Wine grape cytosol 36.81 39.94
Bra018074.1-P Field mustard cytosol, plastid 18.55 39.02
KRH57107 Soybean cytosol 33.91 38.36
PGSC0003DMT400046630 Potato nucleus 33.91 38.36
Solyc03g112550.2.1 Tomato nucleus 34.2 37.34
Solyc06g071600.2.1 Tomato cytosol 31.59 34.71
KRH03250 Soybean cytosol 25.8 34.63
PGSC0003DMT400069649 Potato cytosol, mitochondrion, nucleus, plastid 31.59 34.6
KRH54356 Soybean cytosol 23.48 33.33
Zm00001d011781_P001 Maize plastid 19.42 28.63
TraesCS3D01G535200.1 Wheat mitochondrion, nucleus, plastid 26.67 28.57
TraesCS3B01G599500.1 Wheat cytosol, mitochondrion, nucleus 26.09 28.3
HORVU3Hr1G115810.9 Barley cytosol, mitochondrion, plastid 26.09 27.95
TraesCS3A01G529800.1 Wheat mitochondrion, nucleus, plastid 25.22 27.02
TraesCS1D01G031600.1 Wheat nucleus 24.64 26.98
GSMUA_Achr10P... Banana nucleus 27.83 26.89
TraesCS1B01G037800.1 Wheat nucleus 24.93 26.06
OQU88270 Sorghum cytosol, nucleus, plastid 21.16 24.66
Os05t0110700-01 Rice nucleus 24.93 23.82
Os01t0973200-00 Rice cytosol 23.48 23.48
Zm00001d041956_P002 Maize nucleus 21.16 23.4
Zm00001d011068_P001 Maize plastid 21.45 22.16
EES18884 Sorghum plastid 16.81 18.47
HORVU1Hr1G004480.4 Barley mitochondrion 22.61 18.06
Protein Annotations
EnsemblPlants:Bra019533.1EnsemblPlants:Bra019533.1-PEnsemblPlantsGene:Bra019533Gene3D:3.30.457.50InterPro:Spc25ncoils:Coil
PANTHER:PTHR14281PFAM:PF08234UniParc:UPI000253F06DUniProt:M4DSP0MapMan:13.3.3.2.2.3:
Description
AT3G48210 (E=4e-124) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Kinetochore-Ndc80 complex, subunit Spc25 (InterPro:IPR013255); Has 142 Blast hits to 142 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 61; Fungi - 34; Plants - 34; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Coordinates
chrA06:-:12440867..12443159
Molecular Weight (calculated)
38466.4 Da
IEP (calculated)
8.789
GRAVY (calculated)
-0.585
Length
345 amino acids
Sequence
(BLAST)
001: MEEISGDTTK NSMASLGILC EKDIEEQRLQ IDSFIASPFQ RSMESVLDRA KATAQSQVEL ANVKADLREA EAELVKVLGV KTRKEAKQMG LRDSISATQS
101: RIQLLKRSLQ LHKSNKEEHS KTISHRLQGL SVSKDNAGSK LTGNKSNIDE AISWYNHALG FHVEAGHGVK FTFTNIDAKR PTHEFSFTVH YGNDIYTLLD
201: CNPQLDDMDE MVQELNTTND LFGFVRLMRD KFQKPTLSEL PAHSENLPQE TSIIYASAPA MSITTDTSML TPENKVSKVQ VNRRQKRSSN SPLQSPAPTS
301: STRCSSRLKI GSSSYQRASS STFHHALASP LRRLIAKDSF FQEGT
Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)
001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK
Arabidopsis Description
SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.