Factsheet for TraesCS1D01G031600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G037800.1	Wheat	nucleus	81.59	77.88
Os05t0110700-01	Rice	nucleus	55.24	48.2
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	46.98	45.96
HORVU1Hr1G004480.4	Barley	mitochondrion	62.22	45.37
Zm00001d011068_P001	Maize	plastid	40.0	37.72
GSMUA_Achr10P...	Banana	nucleus	40.32	35.57
EES18884	Sorghum	plastid	32.7	32.8
PGSC0003DMT400046630	Potato	nucleus	31.43	32.46
Solyc03g112550.2.1	Tomato	nucleus	31.11	31.01
VIT_17s0000g08910.t01	Wine grape	cytosol	31.11	30.82
KRH57107	Soybean	cytosol	29.21	30.16
Solyc06g071600.2.1	Tomato	cytosol	29.52	29.62
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	28.89	28.89
KRH63590	Soybean	cytosol	27.3	27.65
AT3G48210.1	Thale cress	cytosol	27.3	27.3
CDY53953	Canola	cytosol	26.03	25.79
KRH03250	Soybean	cytosol	20.63	25.29
Bra019533.1-P	Field mustard	nucleus	26.98	24.64
CDY21814	Canola	nucleus	26.67	24.21
KRH54356	Soybean	cytosol	17.78	23.05
CDY48156	Canola	cytosol	17.46	22.0
Bra018074.1-P	Field mustard	cytosol, plastid	9.21	17.68

Protein Annotations

EnsemblPlants:TraesCS1D01G031600.1	EnsemblPlantsGene:TraesCS1D01G031600	Gene3D:3.30.457.50	InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281
PANTHER:PTHR14281:SF1	PFAM:PF08234	SEG:seg	MapMan:13.3.3.2.2.3	:	:

Description

No Description!

Coordinates

chr1D:-:12318841..12321788

Molecular Weight (calculated)

34573.9 Da

IEP (calculated)

9.270

GRAVY (calculated)

-0.512

Length

315 amino acids

Sequence
(BLAST)

001: MDQPRSKMAE DMAAQRAACE RQMAAGRDRF ASASAAVRAA TLSARSGAHQ SLSRREDLDG LKKRLRDLGA DLGQALSVKL VMESKCEKLR ESISASAATS
101: EQLGDLVTNQ RNRSERHAAV ISDVLEAAEA FEAKNDEDVT QLKDMEKAIC WYQKRLGFQP VVEGEGVKFV FDKVDLQSPE KEFSFSLKFD GDRYTLLRCS
201: PPVEDSEELV KDLNLTNDLI KFVRIIRQRF QAAALNGDLP VSPTVCSDAS AIPISSPVIK SVDSRSKNDR DRSNSQSKNR KPALPAKRKA SALSVASPVS
301: VRRSPRFVGN EGVAS

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.