Factsheet for VIT_17s0000g08910.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046630	Potato	nucleus	55.97	58.36
Solyc03g112550.2.1	Tomato	nucleus	56.6	56.96
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	52.52	53.02
Solyc06g071600.2.1	Tomato	cytosol	50.63	51.27
KRH57107	Soybean	cytosol	48.11	50.16
KRH63590	Soybean	cytosol	44.65	45.66
AT3G48210.1	Thale cress	cytosol	44.65	45.08
KRH03250	Soybean	cytosol	35.53	43.97
CDY53953	Canola	cytosol	41.82	41.82
GSMUA_Achr10P...	Banana	nucleus	41.51	36.97
CDY21814	Canola	nucleus	40.25	36.89
Bra019533.1-P	Field mustard	nucleus	39.94	36.81
KRH54356	Soybean	cytosol	27.04	35.39
CDY48156	Canola	cytosol	25.16	32.0
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	31.76	31.76
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	31.76	31.37
Zm00001d011781_P001	Maize	plastid	22.96	31.2
TraesCS1D01G031600.1	Wheat	nucleus	30.82	31.11
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	31.13	30.75
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	31.13	30.75
Os05t0110700-01	Rice	nucleus	34.28	30.19
OQU88270	Sorghum	cytosol, nucleus, plastid	27.99	30.07
TraesCS1B01G037800.1	Wheat	nucleus	30.19	29.09
Zm00001d041956_P002	Maize	nucleus	27.99	28.53
Os01t0973200-00	Rice	cytosol	30.5	28.12
Zm00001d011068_P001	Maize	plastid	25.47	24.25
EES18884	Sorghum	plastid	23.58	23.89
Bra018074.1-P	Field mustard	cytosol, plastid	11.64	22.56
HORVU1Hr1G004480.4	Barley	mitochondrion	30.19	22.22

Protein Annotations

ArrayExpress:VIT_17s0000g08910	EMBL:FN594950	EnsemblPlants:VIT_17s0000g08910.t01	EnsemblPlantsGene:VIT_17s0000g08910	EntrezGene:100267391	Gene3D:3.30.457.50
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:Spc25	ncoils:Coil	PANTHER:PTHR14281	PFAM:PF08234	ProteinID:CBI14983	ProteinID:CBI14983.3
RefSeq:XP_010663127.1	SEG:seg	UniParc:UPI0001BE0C61	UniProt:D7SHM3	MapMan:13.3.3.2.2.3	:

Description

No Description!

Coordinates

chr17:+:10382198..10392963

Molecular Weight (calculated)

36286.4 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.653

Length

318 amino acids

Sequence
(BLAST)

001: MQSKVEQSAR TKMQELRLIC DKEIPIQQQK IDSAVLSFRR SLETLQSKAH KTVENQVKLG KLKAQLREME DDLVKALAVK TRKEAKKMAI MDSISATKAK
101: IEELKRIVEE HKARKDQCAA IISQQDIALA TYEGKGDQVT GRREEIQEAI AWYNEVLGFQ IEGGHGVKFI FTNINSKNPS EEYSFTIRHA NDTYTLLDCS
201: PHLNDIKELI HELNRTNGLF KFVRIMREKF QKAAEFGVLP QFTPLHQHSS TISISAPVSS VSTDNRDESP AEKNELQIKH ERTNWHSEKA IHEGGRHAFL
301: SPGSALSLRR SPRFQVRK

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.