CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54356	Soybean	cytosol	50.8	65.02
KRH57107	Soybean	cytosol	59.49	60.66
KRH03250	Soybean	cytosol	44.37	53.7
VIT_17s0000g08910.t01	Wine grape	cytosol	45.66	44.65
PGSC0003DMT400046630	Potato	nucleus	43.09	43.93
Solyc03g112550.2.1	Tomato	nucleus	43.09	42.41
PGSC0003DMT400069649	Potato	cytosol, mitochondrion, nucleus, plastid	41.8	41.27
CDY53953	Canola	cytosol	41.8	40.88
Solyc06g071600.2.1	Tomato	cytosol	40.84	40.45
AT3G48210.1	Thale cress	cytosol	37.94	37.46
Bra019533.1-P	Field mustard	nucleus	40.84	36.81
CDY21814	Canola	nucleus	40.84	36.6
CDY48156	Canola	cytosol	24.44	30.4
Zm00001d011781_P001	Maize	plastid	22.51	29.91
GSMUA_Achr10P...	Banana	nucleus	34.08	29.69
TraesCS1D01G031600.1	Wheat	nucleus	27.65	27.3
Os05t0110700-01	Rice	nucleus	31.19	26.87
TraesCS3B01G599500.1	Wheat	cytosol, mitochondrion, nucleus	26.69	26.1
TraesCS3D01G535200.1	Wheat	mitochondrion, nucleus, plastid	26.69	25.78
HORVU3Hr1G115810.9	Barley	cytosol, mitochondrion, plastid	26.37	25.47
TraesCS1B01G037800.1	Wheat	nucleus	27.01	25.45
TraesCS3A01G529800.1	Wheat	mitochondrion, nucleus, plastid	25.4	24.53
OQU88270	Sorghum	cytosol, nucleus, plastid	23.15	24.32
Zm00001d041956_P002	Maize	nucleus	23.47	23.4
EES18884	Sorghum	plastid	23.47	23.25
Zm00001d011068_P001	Maize	plastid	24.76	23.05
Os01t0973200-00	Rice	cytosol	25.08	22.61
HORVU1Hr1G004480.4	Barley	mitochondrion	27.65	19.91
Bra018074.1-P	Field mustard	cytosol, plastid	9.97	18.9

Protein Annotations

EMBL:ACUP02002703	EnsemblPlants:KRH63590	EnsemblPlantsGene:GLYMA_04G186200	EntrezGene:100804876	Gene3D:3.30.457.50	InterPro:Spc25
ncoils:Coil	PANTHER:PTHR14281	PANTHER:PTHR14281:SF0	PFAM:PF08234	ProteinID:KRH63590	ProteinID:KRH63590.1
UniParc:UPI0006ED5654	UniProt:A0A0R0K9W4	MapMan:13.3.3.2.2.3	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:45622254..45627581

Molecular Weight (calculated)

35115.6 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.572

Length

311 amino acids

Sequence
(BLAST)

001: MASICDKDIP LRLHNIDAFI ASYRNSLHSL RATALEAARS QSELAEVKAK LREAEDELVK ALAVKTRREA KRMALKEAIV SVKGRIEDLK TSIQKQRTQN
101: EECATVVSHH RLVLEVSEQK SNESSEHRDE VQEAISWYNR ILGFQIEGGR GVKFSFKNIN VDNPNEEFFF TIRHEDDVYT LLNCKPSVKD TDELIHELNN
201: TNGLFKFVRT MRKKFQEVVA QGRLSMTTNE HQESAFISAS GPVLSISTIT EDNDHQDEPT KGNAHLQKQV NRRRVKSAIL SPGSASSVRQ SPRLKVSTQI
301: LKLYGDVGST V

Best Arabidopsis Sequence Match ( AT3G48210.1 )
(BLAST)

001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK

Arabidopsis Description

SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.