Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G031600.1 | Wheat | nucleus | 77.88 | 81.59 |
| Os05t0110700-01 | Rice | nucleus | 50.61 | 46.26 |
| TraesCS3B01G599500.1 | Wheat | cytosol, mitochondrion, nucleus | 44.55 | 46.23 |
| HORVU1Hr1G004480.4 | Barley | mitochondrion | 53.33 | 40.74 |
| Zm00001d011068_P001 | Maize | plastid | 36.06 | 35.63 |
| GSMUA_Achr10P... | Banana | nucleus | 36.67 | 33.89 |
| EES18884 | Sorghum | plastid | 30.61 | 32.17 |
| PGSC0003DMT400046630 | Potato | nucleus | 29.09 | 31.48 |
| VIT_17s0000g08910.t01 | Wine grape | cytosol | 29.09 | 30.19 |
| Solyc03g112550.2.1 | Tomato | nucleus | 28.18 | 29.43 |
| KRH57107 | Soybean | cytosol | 25.45 | 27.54 |
| KRH63590 | Soybean | cytosol | 25.45 | 27.01 |
| Solyc06g071600.2.1 | Tomato | cytosol | 25.45 | 26.75 |
| PGSC0003DMT400069649 | Potato | cytosol, mitochondrion, nucleus, plastid | 25.15 | 26.35 |
| AT3G48210.1 | Thale cress | cytosol | 24.55 | 25.71 |
| CDY53953 | Canola | cytosol | 24.55 | 25.47 |
| Bra019533.1-P | Field mustard | nucleus | 26.06 | 24.93 |
| CDY21814 | Canola | nucleus | 25.76 | 24.5 |
| KRH54356 | Soybean | cytosol | 16.67 | 22.63 |
| KRH03250 | Soybean | cytosol | 17.58 | 22.57 |
| CDY48156 | Canola | cytosol | 16.67 | 22.0 |
| Bra018074.1-P | Field mustard | cytosol, plastid | 9.09 | 18.29 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G037800.1 | EnsemblPlantsGene:TraesCS1B01G037800 | Gene3D:3.30.457.50 | InterPro:Spc25 | ncoils:Coil | PANTHER:PTHR14281 |
| PANTHER:PTHR14281:SF1 | PFAM:PF08234 | SEG:seg | MapMan:13.3.3.2.2.3 | : | : |
Description
No Description!
Coordinates
chr1B:-:17796124..17798976
Molecular Weight (calculated)
36066.6 Da
IEP (calculated)
9.696
GRAVY (calculated)
-0.522
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQPRSKTAE DLAAQRAACD RQMAAGRDRF ASASAAVRAA ARSAVSGAHQ SLSRREDLVE FKKRLRDLEA DLGQALSLKL TMESKCKRLR ESISASAATS
101: EQLRDLVTGQ RSRSERHAAV ISDVLEAAEA FEAKNDEDVT LMKGMEKAIC WYQKRVGFQA VVEGEGVKFI FDKVDSQSPE KEFSFSLKFD KDRCTLLRCS
201: PPVEDSEELV KDLNLTNDLV KFVRIIRQRF QAAALNGDLP VSPTVCSDAS AIPISSPVTK SVDSTSKNDR DKSNSQSKNR KPALPAKRKA SALSAASPGS
301: VRRSPRFVQG GTGESPADAY PDLAKLILNR
101: EQLRDLVTGQ RSRSERHAAV ISDVLEAAEA FEAKNDEDVT LMKGMEKAIC WYQKRVGFQA VVEGEGVKFI FDKVDSQSPE KEFSFSLKFD KDRCTLLRCS
201: PPVEDSEELV KDLNLTNDLV KFVRIIRQRF QAAALNGDLP VSPTVCSDAS AIPISSPVTK SVDSTSKNDR DKSNSQSKNR KPALPAKRKA SALSAASPGS
301: VRRSPRFVQG GTGESPADAY PDLAKLILNR
001: MEQISNIAGG DTTKETMASL GLICEKDIHE QRLKIDSFIA SPFRRSMNSL VERAQATAQS QVELMNLKAD LREAEDELVK VLAVKTRKEA RQMGIRDSIS
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK
101: ATQSRIEVLR RNLQLQKSKK DDSVRIISQQ LQALSKSKDN AGKVTEDKAD IHEAISWYNH ALGFHVEAGH GVKFTFTNID AKRPTREFSF TVHYGNDIYT
201: LLDSDLQLDY INEMVQELNK TNDLFRFVRL MREQFLKSTL SELPTHSGQL QQETSAISAS APAISFSTDT NMSTPENKRS KVQVNRRQKR GSESPLLAPV
301: STSATRRSSR FKGKK
Arabidopsis Description
SPC25Kinetochore protein SPC25 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93VK9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.