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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX81261
CDX86029
CDX99153
CDY03408
CDY08844
CDY11652
CDY14517
CDY18692
CDY21814
CDY31298
CDY34322
CDY46357
CDY46828
CDY48156
CDY53953
CDY56082
CDY66333
CDY68857

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G01920.1 CDY11652 AT1G69810.1 21798944
AT4G01920.1 CDY56082 AT1G69810.1 21798944
AT4G01920.1 CDY68857 AT1G69810.1 21798944
AT4G01920.1 CDY46357 AT3G28715.1 21798944
AT4G01920.1 CDX86029 AT3G45640.1 21798944
AT4G01920.1 CDX99153 AT3G45640.1 21798944
AT4G01920.1 CDY21814 AT3G48210.1 21798944
AT4G01920.1 CDY48156 AT3G48210.1 21798944
AT4G01920.1 CDY53953 AT3G48210.1 21798944
AT4G01920.1 CDY66333 AT4G15700.1 21798944
AT4G01920.1 CDY03408 AT4G24900.1 21798944
AT4G01920.1 CDY34322 AT4G24900.1 21798944
AT4G01920.1 CDX81261 AT5G64850.1 21798944
AT4G01920.1 CDY08844 AT5G64850.1 21798944
AT4G01920.1 CDY14517 AT5G64850.1 21798944
AT4G01920.1 CDY18692 AT5G64850.1 21798944
AT4G01920.1 CDY31298 AT5G64850.1 21798944
AT4G01920.1 CDY46828 AT5G64850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52787 Canola nucleus 49.5 77.81
CDY22034 Canola endoplasmic reticulum 48.79 76.95
CDY69979 Canola nucleus 48.79 75.98
CDY22036 Canola cytosol 43.45 72.32
CDY65338 Canola cytosol 48.69 72.09
CDY52789 Canola cytosol 28.73 70.2
AT4G01925.1 Thale cress cytosol 19.66 69.64
AT4G11540.1 Thale cress cytosol 35.99 68.0
CDY21921 Canola plastid 26.01 67.89
CDX97701 Canola cytosol 14.21 66.51
AT4G01930.1 Thale cress cytosol 42.14 64.11
AT4G01910.1 Thale cress cytosol 42.04 64.06
CDY50383 Canola cytosol 53.83 63.35
CDY22052 Canola nucleus 40.22 63.03
AT4G01920.1 Thale cress cytosol 41.13 62.01
AT4G01760.1 Thale cress cytosol 41.63 61.92
AT4G01740.1 Thale cress cytosol 40.22 61.2
AT4G02190.1 Thale cress cytosol 40.42 60.85
AT4G11550.1 Thale cress cytosol 40.62 60.33
CDY22035 Canola cytosol 51.81 58.01
AT4G11390.2 Thale cress cytosol 29.33 53.3
CDY52927 Canola cytosol 17.34 45.62
CDY06776 Canola cytosol 13.0 45.26
AT4G02180.1 Thale cress cytosol 44.05 44.19
CDY48718 Canola cytosol 16.33 43.67
CDY29992 Canola cytosol 11.29 42.75
CDY30196 Canola cytosol 17.54 42.54
CDY51540 Canola nucleus 21.67 41.91
CDY46706 Canola mitochondrion 22.48 41.84
CDY41709 Canola peroxisome 21.98 41.44
CDY63456 Canola cytosol 16.43 41.27
CDY28703 Canola cytosol 20.56 40.96
CDY63460 Canola cytosol, mitochondrion 17.14 40.87
CDY58516 Canola nucleus 20.67 40.84
CDX93183 Canola cytosol 27.02 40.24
CDY27940 Canola cytosol 22.58 39.72
CDY36839 Canola cytosol 24.09 39.5
CDY09240 Canola cytosol 18.65 38.95
CDY09238 Canola cytosol 18.65 38.95
CDX74184 Canola plasma membrane 16.03 38.78
CDY60784 Canola cytosol 12.9 38.1
CDX74183 Canola cytosol 13.1 37.79
CDX67463 Canola cytosol 17.54 37.5
CDY64703 Canola cytosol 24.8 37.05
CDY30007 Canola cytosol, nucleus, plastid 24.6 36.69
CDY43524 Canola cytosol 18.55 36.36
CDX88733 Canola cytosol 22.68 36.06
CDX71062 Canola cytosol 22.68 35.94
CDY63290 Canola cytosol 18.15 35.86
CDY29993 Canola cytosol 22.18 35.66
CDY44574 Canola cytosol 17.24 35.48
CDY21132 Canola cytosol 21.47 34.8
CDY44167 Canola cytosol 17.24 34.76
CDY27938 Canola cytosol 15.32 34.62
CDY22883 Canola cytosol 22.48 34.15
CDY42579 Canola nucleus 8.57 31.02
CDY40661 Canola cytosol 23.69 30.84
CDY36353 Canola plastid 9.68 30.77
KRG95394 Soybean nucleus 15.73 27.51
CDX82703 Canola cytosol 26.61 27.36
KRH67075 Soybean nucleus 15.22 26.49
Protein Annotations
MapMan:19.1.6.2Gene3D:2.60.40.790Gene3D:3.30.40.10Gene3D:3.40.50.300GO:A0A078IKE3UniProt:A0A078IKE3
InterPro:ATPase_AAA_CSEnsemblPlants:CDY50382ProteinID:CDY50382ProteinID:CDY50382.1InterPro:CS_domInterPro:DC1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016491GO:GO:0035556GO:GO:0046872GO:GO:0047134GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00096603001InterPro:HSP20-like_chaperoneInterPro:IPR002219InterPro:IPR007052InterPro:IPR008978InterPro:IPR013083
InterPro:P-loop_NTPaseInterPro:PE/DAG-bdPFAM:PF03107ScanProsite:PS00674PFscan:PS50081PFscan:PS51203
SMART:SM00109SUPFAM:SSF49764SUPFAM:SSF52540SUPFAM:SSF57889UniParc:UPI0004EE0946InterPro:Znf_RING/FYVE/PHD
SEG:seg:::::
Description
BnaCnng19140DBnaCnng19140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKE3]
Coordinates
chrLK032905:+:38857..44570
Molecular Weight (calculated)
114087.0 Da
IEP (calculated)
6.113
GRAVY (calculated)
-0.386
Length
992 amino acids
Sequence
(BLAST)
001: MCVCSRHPEV KWAVVLADSK ETKVNLDPEG VFDFSAKAGP ENHVYELKLV LHGKVNVEES KINIGVRSIF CIIEKAEPER WNKLIGGGTT CIAILVPEIW
101: IWEEWMEWIS RTLMEWVEWK SLKTVMMKEL AKPGDKKDEA VKEEAKPVDV VKEDNYRVPL LNQIEVGLGR KWFPLDTPAT PQRIRMACFE EFTCPFCDFE
201: NTHLLSQMES EGGVLLPLFH EHPMMPWNDH MRKGDCCDCF EPQSDGYYCK LCDFFVHKKC GDELSEFIDH HPSHPNHTLR LQKIREGYVC DICDSKIQNL
301: CYHCEMCDFD VDLHCAKYPP PNVIDNFEMH PHKLTLTSAY AVGFSCGFCY KCEECDECDV TFFHVECVWH PAALDHQPEV NHPYHSLHPL KLLTGDPPNY
401: SDGKCRLCGR KVDKELFYHC SSCNFTLDWR CVVNPPPQSV VNLEAHDHQL KLLPRLLSFT CNACGLKGDR SPYMCVQCDF MIHQDCIGLP RVININRHDH
501: RVSRTSVLGD DAMNSVCGVC RKKVDWTCGG FSCQRCPGYV VHSKCATRKD VWNLKELEGI PEEEEDIEPY VVIDENTIQH FSHKEHYLRR IHGNGVLYEN
601: NKRCNACTHP IGLYSFYDCM DCDFSLHQKC AECPKRKRHV LHNEQLTLVT NKEREFYECD ACHRKSNGFM YKDGDKMLDV LCGSISEPFV HPSHPHHPLY
701: YIPTENDDKI CNGCNGEEPH VLRCIEGDCG FVLGFKCATE PKVVKHRVDD HPISLCYGEE EEASGKYWCD ICEKETDSKE WFYTCKDQRA SLHRECVLGD
801: STGLMPRTVA KLYGESFEVV LNNSAEKVVG WAFSHHLMNR SEPIVKDNKL VISAESITYG LQMLQGVQNE NMCLKKSLKD VVTENEFEKK LLSDVIPPSD
901: IGVSFDDIGA LENVKDTLKE LVMLPLQRPE LFDKGQLTKV LFKINMFVFS RFCTSNIFSL FPAAYRERVL VLAATNRPFD LDEAVIRRLP RR
Best Arabidopsis Sequence Match ( AT4G01910.1 )
(BLAST)
001: MDSKGVVSLP LIHNHQMMPW NDLRKGDCCG HFEAISDGYY CKRCDFFVHK TCGDGVSEYI EHPSHPNHTL ELCSNLRFHC DLCGRRTNYL SYYCEICGFI
101: VDLHCAMYPP PEFIENSERH HHKLTLLKER IAAFDCDAKC GKISGNEFAY KCQECDLTFH VDCVWHPSEV YHPLEVNHSY HPSHPLKLHT GQRPDYSDGA
201: CRLCARKIDD RYFYHCSSCN FTLDMRCVLH PPQQSLLNLK AHDHQLTLLP RLDSFTCNAC GLKGDRSPYV CFQCGFMIHQ DCLSLPRLIN INRHDHRVSR
301: TSVLGVVNSV CEVCHRKVDW TCGGFSCQRC SGYVVHSKCA TNKDVWNGKE LEGVPEETED IKPFVVIDNN TIQHFSHKKH YLRLHVNGVL CDDKKRCRAC
401: THPICLQSFY GCMDCDFILH QNCAGFPRKR WHVLHNERLT LVSYEYDFFQ CQACNRFSNG FSYQYSGITF DVGCGSISEP FVHPSHPDHP LYYTLLDEET
501: KSSCNGCNKS SYSVLRCIED DCRFAICFKC ATFPQVVKHR VDDHPLSLCF DKEASGKYWC DICEKETNPE TWFYTCKDYR ASLHIKCVLG DFSWLMPGST
601: IDLSELSKVV LNNSISRPFC SGCKMHCIFP IILKIVGTSD KYFCSIECAF G
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SYI8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.