Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68857 | Canola | nucleus | 74.15 | 76.76 |
| CDY56082 | Canola | nucleus | 76.5 | 76.5 |
| AT1G69810.1 | Thale cress | nucleus | 68.67 | 67.96 |
| CDX86714 | Canola | nucleus | 14.36 | 64.71 |
| Bra016263.1-P | Field mustard | nucleus | 75.46 | 38.64 |
| CDX97845 | Canola | nucleus | 21.15 | 33.61 |
| CDX81493 | Canola | nucleus | 24.54 | 30.32 |
| CDY01891 | Canola | nucleus | 23.76 | 27.74 |
| CDY26717 | Canola | nucleus | 20.37 | 27.18 |
| CDX96044 | Canola | nucleus | 23.24 | 27.13 |
| CDY63770 | Canola | nucleus | 36.03 | 26.85 |
| CDX96692 | Canola | nucleus | 35.51 | 26.31 |
| CDX81900 | Canola | nucleus | 35.51 | 26.2 |
| CDX69548 | Canola | nucleus | 29.24 | 25.93 |
| CDX83804 | Canola | nucleus | 34.73 | 25.83 |
| CDX85563 | Canola | nucleus | 20.89 | 25.81 |
| CDX70593 | Canola | nucleus | 35.25 | 25.67 |
| CDY21693 | Canola | nucleus | 34.73 | 25.63 |
| CDX78611 | Canola | nucleus | 34.99 | 25.43 |
| CDX85052 | Canola | nucleus | 36.03 | 25.09 |
| CDX69549 | Canola | nucleus | 35.77 | 24.86 |
| CDX72327 | Canola | nucleus | 18.28 | 24.56 |
| CDX75196 | Canola | nucleus | 17.75 | 24.03 |
| CDY22006 | Canola | nucleus | 30.29 | 23.67 |
| CDY22299 | Canola | nucleus | 17.75 | 23.45 |
| CDY67287 | Canola | nucleus | 17.75 | 23.45 |
| CDY07121 | Canola | nucleus | 30.29 | 23.43 |
| CDY28692 | Canola | nucleus | 32.9 | 23.42 |
| CDX88573 | Canola | nucleus | 18.28 | 23.26 |
| CDY39879 | Canola | nucleus | 18.54 | 23.13 |
| CDX79347 | Canola | nucleus | 17.75 | 22.82 |
| CDX94553 | Canola | nucleus | 29.24 | 22.81 |
| CDY16669 | Canola | nucleus | 29.24 | 22.76 |
| CDX87347 | Canola | nucleus | 17.75 | 22.67 |
| CDX67971 | Canola | nucleus | 17.49 | 22.56 |
| CDX82900 | Canola | nucleus | 30.29 | 22.26 |
| CDX68787 | Canola | nucleus | 18.28 | 21.94 |
| CDY12937 | Canola | nucleus | 31.59 | 21.92 |
| CDY21301 | Canola | nucleus | 28.98 | 21.89 |
| CDX90863 | Canola | nucleus | 28.98 | 21.89 |
| CDY19535 | Canola | nucleus | 30.81 | 21.38 |
| CDY08634 | Canola | nucleus | 27.94 | 21.27 |
| CDY24892 | Canola | nucleus | 28.98 | 21.18 |
| CDY72612 | Canola | nucleus | 12.27 | 19.5 |
| CDY70096 | Canola | nucleus | 17.49 | 19.42 |
| CDY19255 | Canola | nucleus | 10.18 | 16.39 |
| CDX86713 | Canola | nucleus | 1.31 | 4.24 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | unigene:Bna.29102 | GO:C4N0W9 | UniProt:C4N0W9 | EnsemblPlants:CDY11652 |
| ProteinID:CDY11652 | ProteinID:CDY11652.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00049794001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF24 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0001A647A6 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
BnaC06g30870DBnaC06g30870D protein [Source:UniProtKB/TrEMBL;Acc:C4N0W9]
Coordinates
chrLK032012:+:819408..821680
Molecular Weight (calculated)
42493.6 Da
IEP (calculated)
6.785
GRAVY (calculated)
-0.732
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKEKISSCV HPSDGIVESD KEVELDATKA KLEKVREENE KLKLLLSTVL TDYKSLQMHV SNVIRPQHEA SMELDINSHD DFCVDVSLRL GRSDLNVSKN
101: VDEIDKISLD KISDEISEGS DKKRSALGLG FQIQSCEDPD TDPTMKLDYL SKDFKNTKAD NKCISSRKDI KTARNEDHQE ALEVREHPGL KKTRVCVKAP
201: CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSASLSYYFP
301: FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP AHSSLSFSSS SSDRPSPSNS HTLSFSGLRS QAPLTKYSQM APLSHQTKLS GQQ
101: VDEIDKISLD KISDEISEGS DKKRSALGLG FQIQSCEDPD TDPTMKLDYL SKDFKNTKAD NKCISSRKDI KTARNEDHQE ALEVREHPGL KKTRVCVKAP
201: CEDPSINDGC QWRKYGQKTA KANPLPRAYY RCSMSSNCPV RKQVQRCGED DTSAYMTTYE GTHDHPLPME ATHMAAGTSA AASLLQSGSS SSASLSYYFP
301: FHHVSFSTTN AHPTVTLDLT RPNYDPNQLP AHSSLSFSSS SSDRPSPSNS HTLSFSGLRS QAPLTKYSQM APLSHQTKLS GQQ
001: MIKEETVSYF QTFDGVMAES DKEEELDATK AKVEKVREEN EKLKLLLSTI LNNYNSLQMQ VSKVLGQQQG ASSMELDHID RQDENNDYDV DISLRLGRSE
101: QKISKKEENK VDKISTKNVE ESKDKRSALG FGFQIQSYEA SKLDDLCRQV KLANAENKCV SSRKDVKSVR NENHQDVLEE HEQTGLKKTR VCVKASCEDP
201: SINDGCQWRK YGQKTAKTNP LPRAYYRCSM SSNCPVRKQV QRCGEEETSA FMTTYEGNHD HPLPMEASHM AAGTSAAASL LQSGSSSSSS STSASLSYFF
301: PFHHFSISTT NSHPTVTLDL TRPNYPNQLP DDYPLSSSSF SLNFSSPDPP PPSSHDHTLN FSGLRTQAPL STDSLLARYR TRLSGQQ
101: QKISKKEENK VDKISTKNVE ESKDKRSALG FGFQIQSYEA SKLDDLCRQV KLANAENKCV SSRKDVKSVR NENHQDVLEE HEQTGLKKTR VCVKASCEDP
201: SINDGCQWRK YGQKTAKTNP LPRAYYRCSM SSNCPVRKQV QRCGEEETSA FMTTYEGNHD HPLPMEASHM AAGTSAAASL LQSGSSSSSS STSASLSYFF
301: PFHHFSISTT NSHPTVTLDL TRPNYPNQLP DDYPLSSSSF SLNFSSPDPP PPSSHDHTLN FSGLRTQAPL STDSLLARYR TRLSGQQ
Arabidopsis Description
WRKY36At1g69810 [Source:UniProtKB/TrEMBL;Acc:Q058I4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.