CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22597
CDY41739
CDY43007
CDY60257
CDY67026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G01720.1	CDY22597	AT1G32230.1	19548978
AT4G01720.1	CDY41739	AT1G32230.1	19548978
AT4G01720.1	CDY43007	AT1G32230.1	19548978
AT4G01720.1	CDY60257	AT1G32230.1	19548978
AT4G01720.1	CDY67026	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036315.1-P	Field mustard	nucleus	100.0	100.0
CDY07121	Canola	nucleus	98.37	97.37
AT4G01720.1	Thale cress	nucleus	84.08	84.25
CDX86714	Canola	nucleus	12.86	74.12
CDX97845	Canola	nucleus	20.2	41.08
KRH19450	Soybean	nucleus	28.37	36.29
KRH02502	Soybean	nucleus	27.76	34.78
CDX94553	Canola	nucleus	33.67	33.6
CDY16669	Canola	nucleus	33.47	33.33
CDX82900	Canola	nucleus	35.1	33.01
CDY26717	Canola	nucleus	19.18	32.75
CDX90863	Canola	nucleus	33.67	32.54
CDY21301	Canola	nucleus	33.67	32.54
CDX81493	Canola	nucleus	19.8	31.29
KRH12664	Soybean	nucleus	28.57	31.04
KRH37650	Soybean	nucleus	28.98	31.0
CDY68857	Canola	nucleus	23.27	30.81
CDY11652	Canola	nucleus	23.67	30.29
CDY56082	Canola	nucleus	23.47	30.03
CDY12937	Canola	nucleus	33.47	29.71
CDY19535	Canola	nucleus	33.27	29.53
CDX96044	Canola	nucleus	19.59	29.27
CDX72327	Canola	nucleus	16.94	29.12
CDY01891	Canola	nucleus	19.39	28.96
CDY24892	Canola	nucleus	30.82	28.82
CDX75196	Canola	nucleus	16.53	28.62
CDY08634	Canola	nucleus	29.18	28.43
CDY63770	Canola	nucleus	29.39	28.02
CDY39879	Canola	nucleus	17.55	28.01
CDY67287	Canola	nucleus	16.53	27.93
CDY22299	Canola	nucleus	16.53	27.93
CDX69548	Canola	nucleus	24.29	27.55
CDX81900	Canola	nucleus	28.98	27.36
CDX70593	Canola	nucleus	29.18	27.19
CDX78611	Canola	nucleus	28.98	26.95
CDX79347	Canola	nucleus	16.33	26.85
CDY21693	Canola	nucleus	28.37	26.78
CDX88573	Canola	nucleus	16.33	26.58
CDX96692	Canola	nucleus	27.76	26.31
CDX67971	Canola	nucleus	15.92	26.26
CDX83804	Canola	nucleus	27.35	26.02
CDX68787	Canola	nucleus	16.94	26.02
CDX87347	Canola	nucleus	15.92	26.0
CDX85052	Canola	nucleus	28.78	25.64
CDX69549	Canola	nucleus	28.78	25.59
CDX85563	Canola	nucleus	16.12	25.48
CDY70096	Canola	nucleus	17.14	24.35
CDY28692	Canola	nucleus	26.53	24.16
CDY19255	Canola	nucleus	10.82	22.27
CDY72612	Canola	nucleus	8.16	16.6
CDX86713	Canola	nucleus	3.06	12.71

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078G9D7	UniProt:A0A078G9D7	EnsemblPlants:CDY22006	ProteinID:CDY22006
ProteinID:CDY22006.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00018363001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31429	PANTHER:PTHR31429:SF30	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002542071	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	SEG:seg	:	:	:	:

Description

BnaA09g00350DBnaA09g00350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9D7]

Coordinates

chrLK032127:+:18288..21537

Molecular Weight (calculated)

53943.4 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.828

Length

490 amino acids

Sequence
(BLAST)

001: MEEHSQDGRE IAFLHSGDFL QRDSTSKDHQ PNESSVEHHH KPSIKEVDFF AVKSQPYDLG HMRTTIVGSS SFNSELAPVN SCLRTSSDDD GNDKTKAQIS
101: RLRLELERLH EENHKLKHLL DEISERYNDL QSRVLLARPT QVEGLQQHED IPQAVSSQAL EDRKPMDMNN DIPATTLKRR SPDDVDDRDH RDSPKAPRLY
201: QNKSTNHEEQ QNPHDQLPFR KARVSVRARS DATTVNDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR KQVQRCAEDT TILTTTYEGN HNHPLPPSAT
301: AMAATTSAAA AMLLSGSNTS NFHQTLSTPS AMSSSSSSLY QNFPYTSTIA TLSATAPFPT ITLDLTNPPR PLQPPPPPHF MSQYGPGAYL TNANQTRSIN
401: DNYQQLLLPN LSGPQVPRDM VDTVRAAIAT DPNFTAALAA AISNIIGGGN NNNNANTNDN NNNKVDAKSG GSSNGDSPPL PQSCTTFSTT

Best Arabidopsis Sequence Match ( AT4G01720.1 )
(BLAST)

001: MEEHIQDRRE IAFLHSGEFL HGDSDSKDHQ PNESPVERHH ESSIKEVDFF AAKSQPFDLG HVRTTTIVGS SGFNDGLGLV NSCHGTSSND GDDKTKTQIS
101: RLKLELERLH EENHKLKHLL DEVSESYNDL QRRVLLARQT QVEGLHHKQH EDVPQAGSSQ ALENRRPKDM NHETPATTLK RRSPDDVDGR DMHRGSPKTP
201: RIDQNKSTNH EEQQNPHDQL PYRKARVSVR ARSDATTVND GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDTTILTTTY EGNHNHPLPP
301: SATAMAATTS AAAAMLLSGS SSSNLHQTLS SPSATSSSSF YHNFPYTSTI ATLSASAPFP TITLDLTNPP RPLQPPPQFL SQYGPAAFLP NANQIRSMNN
401: NNQQLLIPNL FGPQAPPREM VDSVRAAIAM DPNFTAALAA AISNIIGGGN NDNNNNTDIN DNKVDAKSGG SSNGDSPQLP QSCTTFSTN

Arabidopsis Description

WRKY47Probable WRKY transcription factor 47 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.