Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67971 | Canola | nucleus | 95.3 | 95.62 |
| CDX88573 | Canola | nucleus | 88.59 | 87.71 |
| CDY22299 | Canola | nucleus | 84.56 | 86.9 |
| CDY67287 | Canola | nucleus | 84.23 | 86.55 |
| CDX87347 | Canola | nucleus | 86.91 | 86.33 |
| AT1G80840.1 | Thale cress | nucleus | 86.58 | 85.43 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 35.57 | 55.21 |
| KRH23643 | Soybean | nucleus | 56.38 | 54.37 |
| KRH47344 | Soybean | nucleus | 55.7 | 53.38 |
| KRH44560 | Soybean | nucleus | 56.04 | 53.35 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 55.03 | 52.73 |
| KRH09652 | Soybean | nucleus | 55.7 | 50.3 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 36.58 | 46.38 |
| GSMUA_Achr11P... | Banana | nucleus | 37.25 | 45.31 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 28.86 | 45.26 |
| GSMUA_Achr10P... | Banana | nucleus | 34.9 | 44.83 |
| CDX86714 | Canola | nucleus | 12.75 | 44.71 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 25.5 | 43.68 |
| CDX72327 | Canola | nucleus | 41.61 | 43.51 |
| Solyc03g116890.2.1 | Tomato | nucleus | 51.01 | 43.43 |
| Solyc06g068460.2.1 | Tomato | nucleus | 51.34 | 42.5 |
| PGSC0003DMT400051047 | Potato | nucleus | 50.34 | 42.25 |
| PGSC0003DMT400073396 | Potato | nucleus | 51.01 | 42.22 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 38.59 | 41.82 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 38.26 | 40.71 |
| CDX75196 | Canola | nucleus | 38.59 | 40.64 |
| CDY39879 | Canola | nucleus | 41.28 | 40.07 |
| CDX68787 | Canola | nucleus | 41.61 | 38.87 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 37.58 | 38.75 |
| GSMUA_Achr10P... | Banana | nucleus | 36.91 | 38.19 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 27.85 | 37.22 |
| Zm00001d020492_P001 | Maize | nucleus | 36.91 | 36.42 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 40.94 | 36.42 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 39.6 | 36.09 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 38.59 | 35.71 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 38.93 | 35.58 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 39.26 | 35.56 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 38.59 | 35.49 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 38.59 | 35.28 |
| Os09t0417600-02 | Rice | nucleus | 38.59 | 35.17 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 38.59 | 35.17 |
| CDY70096 | Canola | nucleus | 40.6 | 35.07 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 31.88 | 35.06 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 38.93 | 35.05 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 37.25 | 34.8 |
| Os02t0181300-01 | Rice | nucleus | 40.27 | 34.48 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 37.92 | 34.45 |
| Os06t0649000-01 | Rice | nucleus | 38.93 | 34.42 |
| Zm00001d053746_P001 | Maize | nucleus | 36.91 | 34.27 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 33.22 | 34.26 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 37.92 | 34.14 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 37.58 | 33.94 |
| EER98905 | Sorghum | nucleus, plastid | 36.91 | 33.64 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 30.54 | 33.58 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 37.25 | 33.53 |
| Zm00001d020495_P001 | Maize | nucleus | 29.87 | 33.46 |
| Zm00001d036726_P001 | Maize | nucleus | 38.59 | 33.43 |
| EER90124 | Sorghum | nucleus | 38.26 | 33.33 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 38.93 | 33.33 |
| Zm00001d046805_P001 | Maize | nucleus | 38.93 | 33.05 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 37.92 | 32.29 |
| Zm00001d015515_P001 | Maize | nucleus | 37.58 | 32.28 |
| EER88729 | Sorghum | nucleus | 37.58 | 32.18 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 37.58 | 32.18 |
| EES04642 | Sorghum | nucleus | 39.26 | 32.14 |
| KXG35639 | Sorghum | nucleus | 31.54 | 31.86 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 37.25 | 31.44 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 37.25 | 31.27 |
| TraesCS7D01G497300.1 | Wheat | plastid | 38.59 | 30.91 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 37.25 | 29.92 |
| Zm00001d005749_P001 | Maize | nucleus | 34.56 | 29.34 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 37.25 | 28.39 |
| Os09t0417800-01 | Rice | nucleus | 30.2 | 28.3 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 38.26 | 28.08 |
| CDX97845 | Canola | nucleus | 17.79 | 21.99 |
| CDY56082 | Canola | nucleus | 23.49 | 18.28 |
| CDX94553 | Canola | nucleus | 29.87 | 18.13 |
| CDY68857 | Canola | nucleus | 22.48 | 18.11 |
| CDY16669 | Canola | nucleus | 29.87 | 18.09 |
| CDY26717 | Canola | nucleus | 17.11 | 17.77 |
| CDY11652 | Canola | nucleus | 22.82 | 17.75 |
| CDX90863 | Canola | nucleus | 30.2 | 17.75 |
| CDY21301 | Canola | nucleus | 30.2 | 17.75 |
| CDX82900 | Canola | nucleus | 30.2 | 17.27 |
| CDX81493 | Canola | nucleus | 17.79 | 17.1 |
| CDY01891 | Canola | nucleus | 18.79 | 17.07 |
| CDX96044 | Canola | nucleus | 18.12 | 16.46 |
| CDX85563 | Canola | nucleus | 17.11 | 16.45 |
| CDY22006 | Canola | nucleus | 26.85 | 16.33 |
| CDY07121 | Canola | nucleus | 26.85 | 16.16 |
| CDY12937 | Canola | nucleus | 29.53 | 15.94 |
| CDY19535 | Canola | nucleus | 29.53 | 15.94 |
| CDY24892 | Canola | nucleus | 27.85 | 15.84 |
| CDY21693 | Canola | nucleus | 26.85 | 15.41 |
| CDX81900 | Canola | nucleus | 26.51 | 15.22 |
| CDY63770 | Canola | nucleus | 26.17 | 15.18 |
| CDX69548 | Canola | nucleus | 21.81 | 15.05 |
| CDX96692 | Canola | nucleus | 25.5 | 14.7 |
| CDX70593 | Canola | nucleus | 25.84 | 14.64 |
| CDX83804 | Canola | nucleus | 25.17 | 14.56 |
| CDY08634 | Canola | nucleus | 24.5 | 14.51 |
| CDX78611 | Canola | nucleus | 25.5 | 14.42 |
| CDX69549 | Canola | nucleus | 26.51 | 14.34 |
| CDX85052 | Canola | nucleus | 26.17 | 14.18 |
| CDY19255 | Canola | nucleus | 11.07 | 13.87 |
| CDY28692 | Canola | nucleus | 24.5 | 13.57 |
| CDX86713 | Canola | nucleus | 3.69 | 9.32 |
| CDY72612 | Canola | nucleus | 7.05 | 8.71 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078CRJ3 | EnsemblPlants:CDX79347 | ProteinID:CDX79347 | ProteinID:CDX79347.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00132030001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EDE90D | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g19560D
Coordinates
chrLK031817:-:1500138..1503215
Molecular Weight (calculated)
32977.7 Da
IEP (calculated)
8.872
GRAVY (calculated)
-0.735
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSSSSSFV DTSLDLTIGV TRMRVEEDST TSALVDELNR VSAENKKLSE MLTLICENYN VLRKQLMEYV NKSNNMTERD QTSPPMKRKS PARDDAVSSA
101: VIGGVSESSS TDQDGQYLCK KKQREETVVK EKVSRVSYKT EASDTTLVVK DGYQWRKYGQ KVTRNNPSPR AYFKCACAPS CSVKKKVQRS VEDQSVLVAT
201: YEGEHNHPMS SQIESNNGLN RYISLGGHTA PAKGSSSSLA EPVTESKKVT SPSRTDFPEV QKLLVEQMAS SLTKDPNFTA ALAAAVTGRL YQQNQTEK
101: VIGGVSESSS TDQDGQYLCK KKQREETVVK EKVSRVSYKT EASDTTLVVK DGYQWRKYGQ KVTRNNPSPR AYFKCACAPS CSVKKKVQRS VEDQSVLVAT
201: YEGEHNHPMS SQIESNNGLN RYISLGGHTA PAKGSSSSLA EPVTESKKVT SPSRTDFPEV QKLLVEQMAS SLTKDPNFTA ALAAAVTGRL YQQNQTEK
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.