Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G232800.1 | Wheat | nucleus | 93.66 | 93.66 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 80.36 | 80.61 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 84.29 | 71.36 |
| Os09t0417600-02 | Rice | nucleus | 63.44 | 64.22 |
| EER98905 | Sorghum | nucleus, plastid | 60.73 | 61.47 |
| Zm00001d020492_P001 | Maize | nucleus | 54.68 | 59.93 |
| Zm00001d005749_P001 | Maize | nucleus | 52.87 | 49.86 |
| Bra019123.1-P | Field mustard | nucleus | 26.89 | 45.88 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 40.18 | 42.77 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.79 | 42.59 |
| PGSC0003DMT400073710 | Potato | nucleus | 27.19 | 41.47 |
| KRH47344 | Soybean | nucleus | 37.16 | 39.55 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 34.44 | 39.45 |
| KRH44560 | Soybean | nucleus | 37.16 | 39.3 |
| AT1G80840.1 | Thale cress | nucleus | 35.65 | 39.07 |
| CDY22299 | Canola | nucleus | 34.14 | 38.97 |
| Bra008435.1-P | Field mustard | nucleus | 34.14 | 38.97 |
| CDX72327 | Canola | nucleus | 33.53 | 38.95 |
| KRH23643 | Soybean | nucleus | 36.25 | 38.84 |
| Bra003588.1-P | Field mustard | nucleus | 34.74 | 38.72 |
| CDX67971 | Canola | nucleus | 34.74 | 38.72 |
| CDY67287 | Canola | nucleus | 33.84 | 38.62 |
| CDX87347 | Canola | nucleus | 34.74 | 38.33 |
| Bra035148.1-P | Field mustard | nucleus | 34.74 | 38.33 |
| CDX79347 | Canola | nucleus | 34.14 | 37.92 |
| CDX88573 | Canola | nucleus | 34.44 | 37.87 |
| CDX75196 | Canola | nucleus | 32.33 | 37.81 |
| Solyc08g067340.2.1 | Tomato | nucleus | 28.7 | 37.55 |
| KRH15674 | Soybean | nucleus | 31.72 | 37.23 |
| PGSC0003DMT400019058 | Potato | nucleus | 29.31 | 37.16 |
| KRH61669 | Soybean | nucleus | 24.17 | 36.36 |
| PGSC0003DMT400019061 | Potato | nucleus | 27.79 | 36.36 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 34.74 | 36.28 |
| Solyc08g067360.2.1 | Tomato | nucleus | 28.1 | 36.05 |
| KRH09652 | Soybean | nucleus | 35.65 | 35.76 |
| Bra010220.1-P | Field mustard | nucleus | 33.23 | 35.71 |
| AT4G31800.1 | Thale cress | nucleus | 33.23 | 35.48 |
| AT2G25000.1 | Thale cress | nucleus | 29.0 | 35.42 |
| PGSC0003DMT400073396 | Potato | nucleus | 38.37 | 35.28 |
| CDY39879 | Canola | nucleus | 32.63 | 35.18 |
| Solyc06g068460.2.1 | Tomato | nucleus | 38.07 | 35.0 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 34.14 | 34.66 |
| Bra011299.1-P | Field mustard | nucleus | 32.93 | 34.38 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 34.14 | 34.35 |
| CDX68787 | Canola | nucleus | 32.93 | 34.17 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 33.23 | 34.16 |
| KRH05350 | Soybean | nucleus | 31.12 | 33.01 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.74 | 32.39 |
| Bra023983.1-P | Field mustard | nucleus | 33.23 | 31.88 |
| CDY70096 | Canola | nucleus | 33.23 | 31.88 |
| Solyc03g116890.2.1 | Tomato | nucleus | 33.53 | 31.71 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 27.49 | 31.49 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 32.02 | 29.86 |
| KRH52329 | Soybean | nucleus | 26.28 | 28.16 |
| TraesCS3B01G130000.1 | Wheat | nucleus | 21.75 | 14.69 |
| TraesCS3B01G199000.2 | Wheat | nucleus | 23.87 | 13.62 |
| TraesCS1B01G434300.1 | Wheat | nucleus | 24.47 | 12.94 |
| TraesCS6B01G357600.1 | Wheat | nucleus | 19.34 | 11.43 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
| PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS5B01G224000 |
| EnsemblPlants:TraesCS5B01G224000.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5B:+:399226181..399227440
Molecular Weight (calculated)
35908.3 Da
IEP (calculated)
7.596
GRAVY (calculated)
-0.602
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCFWTMGTA PVCLDLMVGR PMDHEPSPVR CTGVRTEADV ASSACDRAPP MTNDEAKILE AKLAQVSEEN RKLTEMIAYL YGNQVSRQSP DGEGQQRART
101: AASPTPPAGK KRSQESMDAS HSCDVEISNR NVGTGEAEHV DVDSPLSNGT CRRIKVKKVC TRIDPSDTSL VVKDGYQWRK YGQKVTRDNP SPRAYFRCAF
201: APSCPVKKKV QRSAEDSSVV EATYEGEHNH PHPTRAGELP SYAARSGGSV PCSISTNSSG PTITLDLTKN GGGVQVLDAG EAQPDMKKVC RAVASPEFQR
301: ALVEQMAREL TGDQKFTDAL AAAILRKLPD Y
101: AASPTPPAGK KRSQESMDAS HSCDVEISNR NVGTGEAEHV DVDSPLSNGT CRRIKVKKVC TRIDPSDTSL VVKDGYQWRK YGQKVTRDNP SPRAYFRCAF
201: APSCPVKKKV QRSAEDSSVV EATYEGEHNH PHPTRAGELP SYAARSGGSV PCSISTNSSG PTITLDLTKN GGGVQVLDAG EAQPDMKKVC RAVASPEFQR
301: ALVEQMAREL TGDQKFTDAL AAAILRKLPD Y
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.