Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G31800.1 | Thale cress | nucleus | 68.63 | 60.0 |
| CDY39879 | Canola | nucleus | 64.94 | 57.33 |
| Bra010220.1-P | Field mustard | nucleus | 64.94 | 57.14 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 35.06 | 49.48 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 31.73 | 45.26 |
| PGSC0003DMT400019061 | Potato | nucleus | 40.22 | 43.08 |
| Solyc08g067340.2.1 | Tomato | nucleus | 39.85 | 42.69 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 36.16 | 41.7 |
| PGSC0003DMT400019058 | Potato | nucleus | 39.48 | 41.0 |
| Solyc08g067360.2.1 | Tomato | nucleus | 38.75 | 40.7 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 25.83 | 40.23 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 46.86 | 40.06 |
| GSMUA_Achr11P... | Banana | nucleus | 36.16 | 40.0 |
| GSMUA_Achr10P... | Banana | nucleus | 33.95 | 39.66 |
| KRH15674 | Soybean | nucleus | 40.59 | 39.01 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 40.22 | 38.93 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 39.48 | 38.91 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 31.37 | 38.12 |
| KRH61669 | Soybean | nucleus | 30.63 | 37.73 |
| AT1G80840.1 | Thale cress | nucleus | 40.59 | 36.42 |
| GSMUA_Achr10P... | Banana | nucleus | 38.38 | 36.11 |
| KRH05350 | Soybean | nucleus | 40.59 | 35.26 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 34.32 | 32.18 |
| Zm00001d053746_P001 | Maize | nucleus | 37.64 | 31.78 |
| Os06t0649000-01 | Rice | nucleus | 39.48 | 31.75 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 40.96 | 31.71 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 38.38 | 31.71 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 39.11 | 31.64 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 40.59 | 31.61 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 38.01 | 31.5 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 37.64 | 31.48 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 37.27 | 31.37 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 36.9 | 31.35 |
| Os02t0181300-01 | Rice | nucleus | 40.22 | 31.32 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 38.01 | 31.31 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 37.64 | 31.29 |
| Zm00001d015515_P001 | Maize | nucleus | 39.85 | 31.12 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 37.27 | 30.89 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 40.22 | 30.88 |
| Zm00001d020492_P001 | Maize | nucleus | 34.32 | 30.79 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 36.9 | 30.67 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 39.85 | 30.42 |
| KRH52329 | Soybean | nucleus | 34.69 | 30.42 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 30.26 | 30.26 |
| EER90124 | Sorghum | nucleus | 38.01 | 30.12 |
| EES04642 | Sorghum | nucleus | 40.22 | 29.95 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 29.89 | 29.89 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 31.37 | 29.41 |
| Os09t0417600-02 | Rice | nucleus | 35.42 | 29.36 |
| EER88729 | Sorghum | nucleus | 37.64 | 29.31 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 37.27 | 29.02 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 35.42 | 29.0 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 35.06 | 28.7 |
| Zm00001d046805_P001 | Maize | nucleus | 36.9 | 28.49 |
| Zm00001d020495_P001 | Maize | nucleus | 27.68 | 28.2 |
| EER98905 | Sorghum | nucleus, plastid | 33.95 | 28.13 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 34.32 | 28.1 |
| TraesCS7D01G497300.1 | Wheat | plastid | 38.38 | 27.96 |
| Zm00001d036726_P001 | Maize | nucleus | 35.42 | 27.91 |
| KXG35639 | Sorghum | nucleus | 30.26 | 27.8 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 33.21 | 27.27 |
| Os09t0417800-01 | Rice | nucleus | 29.52 | 25.16 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 37.64 | 25.12 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 33.95 | 24.8 |
| Zm00001d005749_P001 | Maize | nucleus | 32.1 | 24.79 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 33.21 | 23.02 |
| AT1G69810.1 | Thale cress | nucleus | 22.88 | 16.02 |
| AT1G62300.1 | Thale cress | nucleus | 30.26 | 14.83 |
| AT4G01720.1 | Thale cress | nucleus | 26.57 | 14.72 |
| AT1G68150.1 | Thale cress | nucleus | 19.93 | 14.44 |
| AT4G22070.1 | Thale cress | nucleus | 28.41 | 14.31 |
| AT1G18860.1 | Thale cress | nucleus | 26.2 | 13.45 |
| AT5G15130.1 | Thale cress | nucleus | 26.57 | 13.14 |
| AT4G04450.1 | Thale cress | nucleus | 25.46 | 13.07 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:817039 | ProteinID:AAD23013.1 | ProteinID:AEC07648.1 | EMBL:AF452177 |
| EMBL:AK227987 | ArrayExpress:AT2G25000 | EnsemblPlantsGene:AT2G25000 | RefSeq:AT2G25000 | TAIR:AT2G25000 | RefSeq:AT2G25000-TAIR-G |
| EnsemblPlants:AT2G25000.1 | TAIR:AT2G25000.1 | Unigene:At.28320 | EMBL:BT004611 | ncoils:Coil | GO:GO:0002237 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0031347 | GO:GO:0042742 |
| GO:GO:0043565 | GO:GO:0050832 | InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_180072.1 | PFAM:PF03106 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025034 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF32 | UniProt:Q0WSE5 | UniProt:Q9SK33 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000000C3DF | Symbol:WRKY60 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
Coordinates
chr2:+:10629662..10631413
Molecular Weight (calculated)
30579.2 Da
IEP (calculated)
9.569
GRAVY (calculated)
-0.729
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.