Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g067360.2.1 | Tomato | nucleus | 93.49 | 94.57 |
| PGSC0003DMT400019061 | Potato | nucleus | 76.25 | 78.66 |
| GSMUA_Achr7P19340_001 | Banana | nucleus | 37.55 | 51.04 |
| Bra019123.1-P | Field mustard | nucleus | 35.25 | 47.42 |
| GSMUA_Achr2P05100_001 | Banana | nucleus | 34.1 | 46.84 |
| PGSC0003DMT400073710 | Potato | nucleus | 37.93 | 45.62 |
| CDX72327 | Canola | nucleus | 47.89 | 43.86 |
| KRH15674 | Soybean | nucleus | 47.13 | 43.62 |
| GSMUA_Achr10P... | Banana | nucleus | 38.7 | 43.53 |
| GSMUA_Achr5P16460_001 | Banana | nucleus | 38.7 | 42.98 |
| GSMUA_Achr11P... | Banana | nucleus | 40.23 | 42.86 |
| KRH61669 | Soybean | nucleus | 35.63 | 42.27 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 51.34 | 42.27 |
| GSMUA_Achr3P13440_001 | Banana | nucleus | 43.3 | 41.09 |
| CDX75196 | Canola | nucleus | 44.44 | 40.99 |
| AT4G31800.1 | Thale cress | nucleus | 47.89 | 40.32 |
| AT2G25000.1 | Thale cress | nucleus | 41.0 | 39.48 |
| KRH05350 | Soybean | nucleus | 47.13 | 39.42 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 42.15 | 39.29 |
| CDX68787 | Canola | nucleus | 47.89 | 39.19 |
| Bra011299.1-P | Field mustard | nucleus | 47.51 | 39.12 |
| CDY39879 | Canola | nucleus | 45.98 | 39.09 |
| HORVU5Hr1G065380.2 | Barley | nucleus | 26.05 | 39.08 |
| Bra010220.1-P | Field mustard | nucleus | 45.98 | 38.96 |
| GSMUA_Achr7P16090_001 | Banana | endoplasmic reticulum, nucleus, plastid | 32.18 | 37.67 |
| Bra023983.1-P | Field mustard | nucleus | 47.89 | 36.23 |
| GSMUA_Achr10P... | Banana | nucleus | 39.85 | 36.11 |
| CDY70096 | Canola | nucleus | 47.51 | 35.94 |
| PGSC0003DMT400051047 | Potato | nucleus | 48.66 | 35.77 |
| PGSC0003DMT400073396 | Potato | nucleus | 49.04 | 35.56 |
| GSMUA_Achr4P01930_001 | Banana | extracellular, golgi | 36.78 | 33.22 |
| TraesCS7D01G497400.1 | Wheat | nucleus | 41.0 | 32.72 |
| GSMUA_Achr1P10080_001 | Banana | nucleus | 41.76 | 32.54 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 40.61 | 32.42 |
| KRH52329 | Soybean | nucleus | 38.31 | 32.36 |
| TraesCS7B01G418400.1 | Wheat | nucleus | 40.23 | 32.21 |
| TraesCS5D01G232700.1 | Wheat | nucleus | 33.33 | 32.1 |
| Zm00001d053746_P001 | Maize | nucleus | 39.46 | 32.09 |
| TraesCS6A01G146900.1 | Wheat | nucleus | 42.91 | 32.0 |
| TraesCS6D01G136200.1 | Wheat | nucleus | 42.53 | 31.9 |
| Os06t0649000-01 | Rice | nucleus | 41.0 | 31.75 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 32.95 | 31.73 |
| TraesCS7B01G419400.1 | Wheat | nucleus | 39.08 | 31.68 |
| HORVU7Hr1G113830.1 | Barley | nucleus | 38.7 | 31.66 |
| TraesCS7B01G418500.2 | Wheat | nucleus | 39.85 | 31.61 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 39.08 | 31.48 |
| Zm00001d015515_P001 | Maize | nucleus | 41.76 | 31.41 |
| Os02t0181300-01 | Rice | nucleus | 41.76 | 31.32 |
| Os09t0417600-02 | Rice | nucleus | 39.08 | 31.19 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 42.15 | 31.16 |
| TraesCS7D01G497700.1 | Wheat | nucleus | 39.08 | 31.1 |
| TraesCS7D01G497800.1 | Wheat | nucleus | 38.7 | 30.98 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 41.76 | 30.7 |
| EES04642 | Sorghum | nucleus | 42.15 | 30.22 |
| EER90124 | Sorghum | nucleus | 39.46 | 30.12 |
| Zm00001d020492_P001 | Maize | nucleus | 34.48 | 29.8 |
| TraesCS7B01G418600.1 | Wheat | nucleus | 32.95 | 29.76 |
| EER88729 | Sorghum | nucleus | 39.46 | 29.6 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 39.08 | 29.31 |
| TraesCS5D01G232800.1 | Wheat | nucleus | 37.16 | 29.31 |
| TraesCS5B01G224000.1 | Wheat | nucleus | 37.16 | 29.31 |
| Zm00001d046805_P001 | Maize | nucleus | 39.08 | 29.06 |
| EER98905 | Sorghum | nucleus, plastid | 36.4 | 29.05 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 36.4 | 28.7 |
| TraesCS7D01G497300.1 | Wheat | plastid | 40.61 | 28.49 |
| Zm00001d036726_P001 | Maize | nucleus | 37.55 | 28.49 |
| TraesCS5B01G224100.1 | Wheat | nucleus | 36.02 | 28.48 |
| Zm00001d020495_P001 | Maize | nucleus | 28.74 | 28.2 |
| KXG35639 | Sorghum | nucleus | 30.27 | 26.78 |
| Os09t0417800-01 | Rice | nucleus | 32.57 | 26.73 |
| TraesCS5D01G232900.1 | Wheat | nucleus | 36.78 | 25.88 |
| HORVU7Hr1G113850.4 | Barley | nucleus, plastid | 40.23 | 25.86 |
| Zm00001d005749_P001 | Maize | nucleus | 33.33 | 24.79 |
| HORVU5Hr1G065420.15 | Barley | nucleus | 36.4 | 24.3 |
| PGSC0003DMT400076591 | Potato | nucleus | 29.89 | 18.89 |
| PGSC0003DMT400056725 | Potato | nucleus | 32.95 | 17.34 |
| PGSC0003DMT400038852 | Potato | nucleus | 33.72 | 15.8 |
| PGSC0003DMT400017859 | Potato | nucleus | 26.44 | 15.58 |
| PGSC0003DMT400042400 | Potato | nucleus | 31.8 | 15.01 |
| PGSC0003DMT400046570 | Potato | nucleus | 28.74 | 14.29 |
Protein Annotations
| EntrezGene:102599114 | MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | UniProt:M1ABK0 |
| PFAM:PF03106 | EnsemblPlantsGene:PGSC0003DMG400007387 | PGSC:PGSC0003DMG400007387 | EnsemblPlants:PGSC0003DMT400019058 | PFscan:PS50811 | PANTHER:PTHR31429 |
| PANTHER:PTHR31429:SF3 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI00029613BC | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| RefSeq:XP_006361532.1 | SEG:seg | : | : | : | : |
Description
MRNA, 1346 bp sequence [Source:PGSC_GENE;Acc:PGSC0003DMG400007387]
Coordinates
chr8:+:40861937..40864121
Molecular Weight (calculated)
29742.8 Da
IEP (calculated)
5.913
GRAVY (calculated)
-0.722
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTSLGDNSF SIDLNTNLSL HNTNTSPRET LDEELIRMRE ENKKLVTMLT NLCENYNSLQ THLIELLQKY STHNEEDNSN LLLPRKRKAE EECCVNNFEE
101: ASPKRPREIT TNVSTVCVKT NRSDQTSVVK DGYNWRKYGQ KVTRDNPYPR AYYKCSFAPT CPVKKKVQRS IEDPSILVAV YEGEHNHPHP SQTEITVPLV
201: NQDVTTDPTF SNKFMEDIDT NSLQQHLVQQ MASSLTSSPT FTAAVAAAIS GKIFEYDLPF K
101: ASPKRPREIT TNVSTVCVKT NRSDQTSVVK DGYNWRKYGQ KVTRDNPYPR AYYKCSFAPT CPVKKKVQRS IEDPSILVAV YEGEHNHPHP SQTEITVPLV
201: NQDVTTDPTF SNKFMEDIDT NSLQQHLVQQ MASSLTSSPT FTAAVAAAIS GKIFEYDLPF K
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.