Factsheet for PGSC0003DMT400038852

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g051840.2.1	Tomato	nucleus	91.56	80.82
VIT_12s0059g00880.t01	Wine grape	nucleus	64.63	60.71
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	34.65	55.14
GSMUA_Achr5P16750_001	Banana	nucleus	47.76	54.73
PGSC0003DMT400056725	Potato	nucleus	47.76	53.63
GSMUA_Achr10P...	Banana	nucleus	47.04	52.82
GSMUA_Achr3P03090_001	Banana	nucleus	35.73	52.09
PGSC0003DMT400042400	Potato	nucleus	51.71	52.08
KRH22585	Soybean	nucleus	55.83	50.65
GSMUA_Achr6P13630_001	Banana	nucleus	46.32	49.24
GSMUA_Achr6P05880_001	Banana	nucleus	42.01	49.16
GSMUA_Achr2P15200_001	Banana	nucleus	46.32	48.5
KRH25355	Soybean	nucleus	53.32	48.37
KRH56160	Soybean	nucleus	53.32	47.29
GSMUA_Achr10P...	Banana	nucleus	43.09	47.06
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	38.6	44.06
TraesCS3A01G167200.1	Wheat	nucleus	39.5	38.26
TraesCS3B01G199000.2	Wheat	nucleus	39.68	38.1
Zm00001d039245_P001	Maize	nucleus	36.45	37.52
EES02155	Sorghum	nucleus	37.34	36.49
HORVU3Hr1G033740.2	Barley	nucleus, plastid	39.86	35.29
PGSC0003DMT400073710	Potato	nucleus	13.64	35.02
TraesCS3D01G173300.2	Wheat	plastid	39.68	34.75
PGSC0003DMT400019058	Potato	nucleus	15.8	33.72
PGSC0003DMT400019061	Potato	nucleus	13.82	30.43
PGSC0003DMT400046570	Potato	nucleus	28.55	30.29
PGSC0003DMT400073396	Potato	nucleus	19.57	30.28
PGSC0003DMT400076591	Potato	nucleus	22.26	30.02
PGSC0003DMT400051047	Potato	nucleus	17.59	27.61
PGSC0003DMT400017859	Potato	nucleus	21.9	27.54
Os01t0246700-01	Rice	nucleus	16.7	22.52

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1B7H2	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400015015	PGSC:PGSC0003DMG400015015	EnsemblPlants:PGSC0003DMT400038852	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF21
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00029532C8	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400015015]

Coordinates

chr7:+:46043497..46046483

Molecular Weight (calculated)

60262.8 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.792

Length

557 amino acids

Sequence
(BLAST)

001: MESSYNNRSP PPTIQFPVNL NCSTTHHDQD EQHIRPVIDE MDFFADKKND TNSEEPTTAN DSDRKESNTP PPPPGLDFNI NTALHLLTAN TYSDQSLVDD
101: GLSPNSDDKR IKSELVVLQA ELERMNGENR RLRDMLNQVK NNYNTLQMHM MTVMQQNQES GQRDGKSEEV KHQNGHGGGG GQVVPRQFMD LGLAASEAEE
201: TSQSSSEGRS GREKSRSPAN NIEAGSTCGI IREDSPEKES PGWGSNKIPR LGNSSTNKPA DQATEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG
301: NPCPRAYYRC TMAAGCPVRK QVQRCAEDRT ILITTYEGTH NHPLPPAAMG MASTTSSAAR MLLSGSMPSA DGLMNPNFFA RTLLPCSSSM ATISASAPFP
401: TVTLDLTQSP NPLQFPRPPN PFQVPFSNPT HNNILANPAA LLPQIFGQAL YNQSKFSGLQ SSQDLEGQQH PSTMSSSNHN PLADTVNALT SDPNFTAALA
501: AAITSLIGNP GQSNNGTNNT IATTTTPANN NNNSVTNNGN NNSNGNNKVT NSSFPAN

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.