Factsheet for PGSC0003DMT400056725

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032950.2.1	Tomato	nucleus	94.15	93.78
PGSC0003DMT400042400	Potato	nucleus	71.98	64.56
VIT_10s0116g01200.t01	Wine grape	nucleus	63.51	58.88
CDX97845	Canola	nucleus	27.62	56.85
GSMUA_Achr3P03090_001	Banana	nucleus	41.94	54.45
KRH36485	Soybean	nucleus	58.47	53.6
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	37.7	53.43
KRH11472	Soybean	nucleus	59.68	53.14
KRH02033	Soybean	nucleus	52.22	52.97
GSMUA_Achr5P16750_001	Banana	nucleus	50.81	51.85
KRH51128	Soybean	nucleus, plastid	53.83	51.64
CDX82900	Canola	nucleus	52.22	49.71
GSMUA_Achr10P...	Banana	nucleus	49.4	49.4
AT1G62300.1	Thale cress	nucleus	55.04	49.37
AT4G22070.1	Thale cress	nucleus	53.43	49.26
CDY12937	Canola	nucleus	54.64	49.09
CDY19535	Canola	nucleus	54.44	48.91
Bra027057.1-P	Field mustard	nucleus	54.44	48.91
CDY21301	Canola	nucleus	49.4	48.32
GSMUA_Achr6P05880_001	Banana	nucleus	46.37	48.32
Bra013584.1-P	Field mustard	nucleus	52.22	48.14
CDX90863	Canola	nucleus	49.19	48.13
Bra000793.1-P	Field mustard	nucleus	50.2	47.98
PGSC0003DMT400038852	Potato	nucleus	53.63	47.76
GSMUA_Achr6P13630_001	Banana	nucleus	50.0	47.33
AT4G04450.1	Thale cress	nucleus	49.8	46.78
GSMUA_Achr2P15200_001	Banana	nucleus	49.8	46.43
Bra034482.1-P	Field mustard	nucleus	46.98	45.96
CDX94553	Canola	nucleus	44.76	45.21
CDY16669	Canola	nucleus	44.76	45.12
CDY24892	Canola	nucleus	47.38	44.85
CDY08634	Canola	nucleus	45.36	44.73
Bra029491.1-P	Field mustard	nucleus	43.95	44.31
GSMUA_Achr10P...	Banana	nucleus	45.36	44.12
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	41.33	42.01
TraesCS3B01G199000.2	Wheat	nucleus	45.36	38.79
TraesCS3A01G167200.1	Wheat	nucleus	44.96	38.78
Zm00001d039245_P001	Maize	nucleus	41.33	37.89
EES02155	Sorghum	nucleus	41.73	36.32
HORVU3Hr1G033740.2	Barley	nucleus, plastid	45.56	35.93
TraesCS3D01G173300.2	Wheat	plastid	45.16	35.22
PGSC0003DMT400019058	Potato	nucleus	17.34	32.95
PGSC0003DMT400073710	Potato	nucleus	14.31	32.72
PGSC0003DMT400076591	Potato	nucleus	25.2	30.27
PGSC0003DMT400019061	Potato	nucleus	15.32	30.04
PGSC0003DMT400073396	Potato	nucleus	21.37	29.44
PGSC0003DMT400046570	Potato	nucleus	30.85	29.14
PGSC0003DMT400017859	Potato	nucleus	25.2	28.22
PGSC0003DMT400051047	Potato	nucleus	19.76	27.61
Os01t0246700-01	Rice	nucleus	19.76	23.73

Protein Annotations

EntrezGene:102605761	MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EMBL:KF280263
UniProt:M1BZU7	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400022063	PGSC:PGSC0003DMG400022063	EnsemblPlants:PGSC0003DMT400056725	PFscan:PS50811
PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002966834	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_006350473.1	SEG:seg	:	:	:

Description

WRKY1a transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022063]

Coordinates

chr2:-:17248582..17250757

Molecular Weight (calculated)

55216.0 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.660

Length

496 amino acids

Sequence
(BLAST)

001: MDKGWGLTLE NKPFFGFNHM MNRREEQLVA DHDKKEVDFF SHHNRKPIHH DFIKKEDSNT TTITTPSEFI VNTGLQLVTA SDQSTVDDGI SSEIILEEER
101: AKNELAQLQV ELRRMNAENQ RLRGMLTQVT NNYTALQMHL ATLMQQQQQQ QISTTQNTHD QIVEAKFDQE KIVPGRFLEL GRSDNDLSHN SHSSSEERTV
201: SKSPRNDTQV TRHNKAGREE SPESESWVPN KVPKLNSSMP TDATMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ
301: RCAEDRTILN TTYEGTHNHP LPPAAMAMAS TTSAAANMLL SGSMSSADGT LMNPNFLART MLPCSSSMAT ISASAPFPTI TLDLTQNQNS LTYNQTSTPI
401: SQFQIPFQSS PQHPNFITSM PPPPPMPQVL HNQSKFSGLQ ISQDIHQPQQ LQHVQNHRSF SDTLTAATAA ITADPNFTAA LAAAISSIIT GPGKEQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.