Factsheet for Solyc02g032950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056725	Potato	nucleus	93.78	94.15
Solyc02g080890.2.1	Tomato	nucleus	70.08	63.45
VIT_10s0116g01200.t01	Wine grape	nucleus	63.25	58.88
CDX97845	Canola	nucleus	28.31	58.51
GSMUA_Achr3P03090_001	Banana	nucleus	42.57	55.5
KRH02033	Soybean	nucleus	52.81	53.78
KRH36485	Soybean	nucleus	58.23	53.6
GSMUA_Achr3P31130_001	Banana	mitochondrion, nucleus	37.55	53.43
KRH11472	Soybean	nucleus	59.24	52.96
KRH51128	Soybean	nucleus, plastid	54.42	52.42
GSMUA_Achr5P16750_001	Banana	nucleus	50.8	52.06
GSMUA_Achr10P...	Banana	nucleus	49.8	50.0
CDX82900	Canola	nucleus	52.21	49.9
AT1G62300.1	Thale cress	nucleus	55.02	49.55
AT4G22070.1	Thale cress	nucleus	53.41	49.44
GSMUA_Achr6P05880_001	Banana	nucleus	46.79	48.95
CDY12937	Canola	nucleus	54.22	48.91
Bra027057.1-P	Field mustard	nucleus	54.02	48.73
CDY19535	Canola	nucleus	54.02	48.73
CDY21301	Canola	nucleus	49.4	48.52
Bra000793.1-P	Field mustard	nucleus	50.4	48.36
Bra013584.1-P	Field mustard	nucleus	52.21	48.33
CDX90863	Canola	nucleus	49.2	48.32
GSMUA_Achr6P13630_001	Banana	nucleus	50.4	47.9
AT4G04450.1	Thale cress	nucleus	49.6	46.78
GSMUA_Achr2P15200_001	Banana	nucleus	49.8	46.62
Bra034482.1-P	Field mustard	nucleus	46.99	46.15
CDX94553	Canola	nucleus	44.58	45.21
CDY16669	Canola	nucleus	44.58	45.12
CDY24892	Canola	nucleus	47.19	44.85
CDY08634	Canola	nucleus	45.18	44.73
Bra029491.1-P	Field mustard	nucleus	43.78	44.31
GSMUA_Achr10P...	Banana	nucleus	44.98	43.92
Solyc07g051840.2.1	Tomato	nucleus	55.02	43.42
GSMUA_Achr6P07620_001	Banana	nucleus, plastid	41.16	42.01
TraesCS3B01G199000.2	Wheat	nucleus	46.18	39.66
TraesCS3A01G167200.1	Wheat	nucleus	45.78	39.65
Zm00001d039245_P001	Maize	nucleus	41.77	38.45
EES02155	Sorghum	nucleus	42.17	36.84
HORVU3Hr1G033740.2	Barley	nucleus, plastid	46.39	36.73
TraesCS3D01G173300.2	Wheat	plastid	45.98	36.01
Solyc12g042590.1.1	Tomato	nucleus	14.86	34.26
Solyc08g067360.2.1	Tomato	nucleus	16.67	32.17
Solyc08g067340.2.1	Tomato	nucleus	15.46	30.43
Solyc03g113120.2.1	Tomato	nucleus	31.53	29.96
Solyc06g068460.2.1	Tomato	nucleus	21.49	29.72
Solyc05g007110.2.1	Tomato	nucleus	23.29	29.59
Solyc02g067430.2.1	Tomato	nucleus	25.7	29.09
Solyc01g104550.2.1	Tomato	nucleus	26.91	28.21
Solyc03g116890.2.1	Tomato	nucleus	19.48	27.71
Solyc06g070990.2.1	Tomato	nucleus	32.13	24.65
Os01t0246700-01	Rice	nucleus	20.28	24.46

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4B5N8	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc02g032950.2
EnsemblPlants:Solyc02g032950.2.1	UniParc:UPI0002767575	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:29490478..29492508

Molecular Weight (calculated)

55563.7 Da

IEP (calculated)

8.191

GRAVY (calculated)

-0.624

Length

498 amino acids

Sequence
(BLAST)

001: MDKGWGLTLE NKPFFGFNHM MNRREEQLVA DHDKKEVDFF SHHNRKAIHH DFIKKEDLNS TTITTPSKFI VNTGLQLVTA SDQSTVDDGE LILEEERAKN
101: ELAELQVELR RMNAENQRLR GMLTQVTNNY TALQMHLATL MQQQRQNISI TQNTHDHNFQ IVEAKLNQEK IVPRRFLELG RSGNDLSHNS NSSSEERTVS
201: KSPRNDTQVT IMHNKGREES PESDSWVPNK VPKLNSSMPI DPTTDATMRK ARVSVRARSE APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK
301: QVQRCAEDRT ILNTTYEGTH NHPLPPAAMA MASTTSAAAN MLLSGSMSSA DGVLMNPNFL ARTMLPCSSS MATISASAPF PTVTLDLTQN QNSLTYNQRS
401: TQISQFQVPF QSSPQHPNFI TSMPPPPMPQ VLHNQSKFSG LQISQDIHHP QQLQHVQNHQ SFSDTLTAAT AAITADPNFT AALAAAISSI ITGPGKEQ

Best Arabidopsis Sequence Match ( AT1G62300.1 )
(BLAST)

001: MDRGWSGLTL DSSSLDLLNP NRISHKNHRR FSNPLAMSRI DEEDDQKTRI STNGSEFRFP VSLSGIRDRE DEDFSSGVAG DNDREVPGEV DFFSDKKSRV
101: CREDDEGFRV KKEEQDDRTD VNTGLNLRTT GNTKSDESMI DDGESSEMED KRAKNELVKL QDELKKMTMD NQKLRELLTQ VSNSYTSLQM HLVSLMQQQQ
201: QQNNKVIEAA EKPEETIVPR QFIDLGPTRA VGEAEDVSNS SSEDRTRSGG SSAAERRSNG KRLGREESPE TESNKIQKVN STTPTTFDQT AEATMRKARV
301: SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAVAMAS TTTAAANMLL SGSMSSHDGM
401: MNPTNLLARA VLPCSTSMAT ISASAPFPTV TLDLTHSPPP PNGSNPSSSA ATNNNHNSLM QRPQQQQQQM TNLPPGMLPH VIGQALYNQS KFSGLQFSGG
501: SPSTAAFSQS HAVADTITAL TADPNFTAAL AAVISSMING TNHHDGEGNN KNQ

Arabidopsis Description

WRKY6Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.